CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Desulfovibrio alaskensis G20
 

Desulfovibrio alaskensis G20

Genome
 

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Total size (bp) 3730232
G + C content (%) 57.84
Coding sequences 3258
Coding density (%) 87.22
Average gene length (bp) 999

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 64
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
67 19 4 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (48 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 29
Histidine Kinase, Hybrid 14
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (64) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family VieB Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family RsbU Family PleD_VieA Family PleD Family CheY Family FrzZ Family VieB Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 4CheY 21CitT 0CsrA 0
CyC-C 0FrzZ 2HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 2
NtrC 13OmpR 1PglZ 0PilB 0PleD 2
PleD_VieA 1PrrA 0RpfG 4RsbU 1Sarp 0
Spo0A 0TrxB 0VieA 0VieB 2WcaA 0
Xre 0YcbB 0YesN 0unclassified 8
misPredicted TCS proteins (3)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 2
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(5)
HisKa 0
Hpt 5

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