CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Desulfobacterium autotrophicum HRM2
 

Desulfobacterium autotrophicum HRM2

Genome
 

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Total size (bp) 5589073
G + C content (%) 48.85
Coding sequences 4867
Coding density (%) 88.6
Average gene length (bp) 1017

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 39
Max spacer hisKA - HATPase domains 58
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
85 36 5 2 Pentad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (86 + 2) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 55
Histidine Kinase, Hybrid 26
Histidine Kinase, Unorthodox 3
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 2
P2CS Predicted Response Regulators (96) - Phylogenetic Tree - Data Heatmap
NtrC Family PrrA Family OmpR Family NarL Family CheB Family RpfG Family RsbU Family PleD_VieA Family PleD Family CheY Family TrxB Family VieB Family unclassified Family NtrC Family PrrA Family OmpR Family NarL Family CheB Family RpfG Family RsbU Family PleD_VieA Family PleD Family CheY Family TrxB Family VieB Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 2
CheC 0CheV 0CheY 27CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 6
NtrC 19OmpR 7PglZ 0PilB 0PleD 3
PleD_VieA 2PrrA 1RpfG 5RsbU 2Sarp 0
Spo0A 0TrxB 1VieA 0VieB 1WcaA 0
Xre 0YcbB 0YesN 0unclassified 20
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(3)
HisKa 2
Hpt 1

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