CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Dehalococcoides sp. CBDB1
 

Dehalococcoides sp. CBDB1

Genome
 

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Total size (bp) 1395502
G + C content (%) 47.02
Coding sequences 1458
Coding density (%) 90.06
Average gene length (bp) 862

Histidine domain Logo
Mean spacer hisKA - HATPase domains 46
Min spacer hisKA - HATPase domains 39
Max spacer hisKA - HATPase domains 51
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
13 21 0 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (26 + 1) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 22
Histidine Kinase, Hybrid 4
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 1
P2CS Predicted Response Regulators (29) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family RpfG Family CheY Family AlpA Family OmpR Family NarL Family RpfG Family CheY Family AlpA Family
AlpA 1AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 2CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 7
NtrC 0OmpR 17PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 2RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 0
misPredicted TCS proteins (1)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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