CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Clostridium saccharoperbutylacetonicum N1-4(HMT)
 

Clostridium saccharoperbutylacetonicum N1-4(HMT)

Genome
 

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Total size (bp) 6530257
G + C content (%) 29.54
Coding sequences 5715
Coding density (%) 82.76
Average gene length (bp) 946

Histidine domain Logo
Mean spacer hisKA - HATPase domains 36
Min spacer hisKA - HATPase domains 7
Max spacer hisKA - HATPase domains 102
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
35 60 3 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (81 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 70
Histidine Kinase, Hybrid 7
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (81) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family AmiR_NasR Family CheY Family YcbB Family CheC Family unclassified Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family AmiR_NasR Family CheY Family YcbB Family CheC Family unclassified Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 2
CheC 1CheV 1CheY 8CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 4MerR 0NarL 4
NtrC 0OmpR 35PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 4RsbU 0Sarp 0
Spo0A 1TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 1YesN 14unclassified 5
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(2)
HisKa 0
Hpt 2

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