CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Clostridium beijerinckii NCIMB 8052
 

Clostridium beijerinckii NCIMB 8052

Genome
 

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Total size (bp) 6000632
G + C content (%) 29.86
Coding sequences 5020
Coding density (%) 79.43
Average gene length (bp) 949

Histidine domain Logo
Mean spacer hisKA - HATPase domains 38
Min spacer hisKA - HATPase domains 8
Max spacer hisKA - HATPase domains 119
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
52 56 2 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (95 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 76
Histidine Kinase, Hybrid 13
Histidine Kinase, Unorthodox 2
Histidine Kinase, CheA 4
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (78) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family CheY Family YcbB Family Sarp Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family CheY Family YcbB Family Sarp Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 3
CheC 0CheV 1CheY 9CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 5MerR 0NarL 3
NtrC 1OmpR 35PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 2RsbU 0Sarp 1
Spo0A 1TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 1YesN 11unclassified 5
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 0
Hpt 1

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