CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Clostridium acetobutylicum EA 2018
 

Clostridium acetobutylicum EA 2018

Genome
 

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Total size (bp) 3940230
G + C content (%) 30.92
Coding sequences 3740
Coding density (%) 86.72
Average gene length (bp) 914

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 24
Max spacer hisKA - HATPase domains 53
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
22 27 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (37 + 0) - Phylogenetic Tree - Data Heatmap
Classic CheA Classic CheA
Histidine Kinase, Classic 35
Histidine Kinase, Hybrid 0
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 2
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (42) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family LytTR Family Spo0A Family CheB Family CheV Family AmiR_NasR Family CheY Family YcbB Family CheC Family OmpR Family NarL Family LytTR Family Spo0A Family CheB Family CheV Family AmiR_NasR Family CheY Family YcbB Family CheC Family
AlpA 0AmiR_NasR 1ArsR 0BetR 0CheB 1
CheC 1CheV 1CheY 4CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 3MerR 0NarL 7
NtrC 0OmpR 22PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 1TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 1YesN 0unclassified 0
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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