CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Burkholderia sp. YI23 plasmid byi_1p
 

Burkholderia sp. YI23 plasmid byi_1p

Genome
 

Enlarge Image - Zoomable Map
Total size (bp) 1951047
G + C content (%) 63.02
Coding sequences 1651
Coding density (%) 85.23
Average gene length (bp) 1007

Histidine domain Logo
Mean spacer hisKA - HATPase domains 40
Min spacer hisKA - HATPase domains 43
Max spacer hisKA - HATPase domains 56
Quick Search
Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
24 6 1 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (22 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox Classic Hybrid Unorthodox
Histidine Kinase, Classic 13
Histidine Kinase, Hybrid 8
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (17) - Phylogenetic Tree - Data Heatmap
OmpR Family NarL Family CheY Family FrzZ Family unclassified Family OmpR Family NarL Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 0CheY 7CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 3
NtrC 0OmpR 4PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 2
misPredicted TCS proteins (5)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 5
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

Locations of visitors to this page