CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Burkholderia phymatum STM815 plasmid pBPHY01
 

Burkholderia phymatum STM815 plasmid pBPHY01

Genome
 

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Total size (bp) 1904893
G + C content (%) 61.87
Coding sequences 1626
Coding density (%) 84.1
Average gene length (bp) 985

Histidine domain Logo
Mean spacer hisKA - HATPase domains 42
Min spacer hisKA - HATPase domains 37
Max spacer hisKA - HATPase domains 50
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
21 6 2 0 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (20 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Classic Hybrid
Histidine Kinase, Classic 11
Histidine Kinase, Hybrid 9
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 0
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (18) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family CheV Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family CheV Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 1CheY 3CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 9
NtrC 1OmpR 3PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 0RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 1
misPredicted TCS proteins (2)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 1
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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