CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Alteromonas macleodii str. Ionian Sea UM4b
 

Alteromonas macleodii str. Ionian Sea UM4b

Genome
 

Enlarge Image - Zoomable Map
Total size (bp) 4438767
G + C content (%) 44.88
Coding sequences 3868
Coding density (%) 86.26
Average gene length (bp) 990

Histidine domain Logo
Mean spacer hisKA - HATPase domains 39
Min spacer hisKA - HATPase domains 15
Max spacer hisKA - HATPase domains 102
Quick Search
Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
61 22 0 0 Pentad 1
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (51 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 28
Histidine Kinase, Hybrid 17
Histidine Kinase, Unorthodox 5
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (53) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family CheB Family RpfG Family CheV Family PleD_VieA Family PleD Family CheY Family FrzZ Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 1
CheC 0CheV 2CheY 5CitT 0CsrA 0
CyC-C 0FrzZ 1HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 1MerR 0NarL 8
NtrC 5OmpR 12PglZ 0PilB 0PleD 4
PleD_VieA 1PrrA 0RpfG 4RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 9
misPredicted TCS proteins (3)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 1
misPredicted Phosphotransfer Protein 2
Phosphotransfer Proteins(6)
HisKa 3
Hpt 3

Locations of visitors to this page