CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database Alkaliphilus metalliredigens QYMF
 

Alkaliphilus metalliredigens QYMF

Genome
 

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Total size (bp) 4929566
G + C content (%) 36.82
Coding sequences 4625
Coding density (%) 82.98
Average gene length (bp) 884

Histidine domain Logo
Mean spacer hisKA - HATPase domains 36
Min spacer hisKA - HATPase domains 8
Max spacer hisKA - HATPase domains 56
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
Cross-talk
TCS Organization
Orphan Pair Triad Tetrad Pentad+
33 44 0 1 0
Partnership View
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (61 + 0) - Phylogenetic Tree - Data Heatmap
Classic Hybrid Unorthodox CheA Classic Hybrid Unorthodox CheA
Histidine Kinase, Classic 58
Histidine Kinase, Hybrid 1
Histidine Kinase, Unorthodox 1
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 0
P2CS Predicted Response Regulators (63) - Phylogenetic Tree - Data Heatmap
NtrC Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family CheY Family YcbB Family Sarp Family CheC Family unclassified Family NtrC Family OmpR Family NarL Family LytTR Family Spo0A Family YesN Family CheB Family RpfG Family CheV Family RsbU Family AmiR_NasR Family CheY Family YcbB Family Sarp Family CheC Family unclassified Family
AlpA 0AmiR_NasR 2ArsR 0BetR 0CheB 1
CheC 1CheV 1CheY 3CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 5MerR 0NarL 6
NtrC 2OmpR 27PglZ 0PilB 0PleD 0
PleD_VieA 0PrrA 0RpfG 1RsbU 1Sarp 1
Spo0A 1TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 1YesN 5unclassified 5
misPredicted TCS proteins (0)
misPredicted Histidine Kinase 0
misPredicted Response Regulator 0
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(1)
HisKa 1
Hpt 0

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