CEA/DSV/IBeB/SBVMe/LEMIRE - P2CS Database
 

Acid Mine Drainage

Metagenome
 
Total size (bp) 10830886
G + C content (%) 43.36
Coding sequences
Coding density (%) 0
Average gene length (bp) 0

Histidine domain Logo
Mean spacer hisKA - HATPase domains 44
Min spacer hisKA - HATPase domains 44
Max spacer hisKA - HATPase domains 58
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Gene list (separated by carriage return)
Locus-tag
Gene name
GI
Domain description
TCSs
export TCSs (Excel) - (Tab-delimited) - (Nucleotide Fasta) - (Aminoacid Fasta)
P2CS Predicted Histidine Kinases (15 + 3)
Classic CheA Classic CheA
Histidine Kinase, Classic 14
Histidine Kinase, Hybrid 0
Histidine Kinase, Unorthodox 0
Histidine Kinase, CheA 1
Possible incomplete Histidine Kinase 3
P2CS Predicted Response Regulators (22)
NtrC Family OmpR Family NarL Family RpfG Family CheV Family PleD_VieA Family CheY Family unclassified Family NtrC Family OmpR Family NarL Family RpfG Family CheV Family PleD_VieA Family CheY Family unclassified Family
AlpA 0AmiR_NasR 0ArsR 0BetR 0CheB 0
CheC 0CheV 2CheY 3CitT 0CsrA 0
CyC-C 0FrzZ 0HalX 0HxlR 0IclR 0
LmbE 0LysR 0LytTR 0MerR 0NarL 1
NtrC 6OmpR 3PglZ 0PilB 0PleD 0
PleD_VieA 1PrrA 0RpfG 1RsbU 0Sarp 0
Spo0A 0TrxB 0VieA 0VieB 0WcaA 0
Xre 0YcbB 0YesN 0unclassified 5
misPredicted TCS proteins (4)
misPredicted Histidine Kinase 1
misPredicted Response Regulator 3
misPredicted Phosphotransfer Protein 0
Phosphotransfer Proteins(0)
HisKa 0
Hpt 0

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