#Xanthomonas axonopodis pv. citrumelo F1 (Xanthomonas alfalfae (124 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
XACM_0113	129014	130213	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	6
XACM_0114	130210	130842	+	two-component system regulatory protein	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_0192	224813	225868	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	0
XACM_0193	225861	227288	+	two-component system regulatory protein	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
XACM_0210	243166	244608	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
XACM_0211	244593	245939	+	two-component system regulatory protein	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
XACM_0311	352158	352841	-	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_0312	352838	354217	-	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
XACM_0487	549483	551747	-	two-component system sensor protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	1
XACM_0488	551793	553769	-	two-component system regulatory protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 GGDEF,1 EAL	0
XACM_0622	713535	714584	+	two-component system sensor protein	PP	HisKa	Phosphotransfer protein contains 1 His_kinase	0
XACM_0623	714615	715352	+	two-component system regulatory protein	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
XACM_0688	789404	791215	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 PAS,1 HisKA,1 HATPase_c	1
XACM_0689	791212	791652	+	two-component system regulatory protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_0690	791656	793158	+	histidine kinase-response regulator hybrid                     protein	HK	Hybrid	Histidine kinase, Hybrid contains 2 Response_reg,1 HisKA,1 HATPase_c	0
XACM_0727	837598	839100	-	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
XACM_0728	839097	839816	-	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_0755	866431	869091	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
XACM_0756	869081	869797	+	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_0832	958681	959394	+	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_0833	959537	960808	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
XACM_0878	1001991	1002455	-	two-component system regulatory protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_0879	1002452	1004362	-	two-component system sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 CHASE3,1 HisKA,1 HATPase_c,1 Response_reg	1
XACM_1022	1144757	1146085	-	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
XACM_1023	1146158	1146847	-	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_1033	1152670	1153938	-	Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	0
XACM_1119	1241028	1241414	+	two-component system response regulator PilH                     family	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_1196	1343299	1344015	+	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_1197	1344008	1345297	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
XACM_1203	1348719	1349915	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
XACM_1204	1349915	1350556	+	two-component system regulatory protein	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_1241	1388195	1388986	-	transcriptional regulator HrpG	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_1250	1398933	1399808	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
XACM_1251	1399798	1401753	+	two-component system sensor histidine                     kinase-response regulator hybridprotein	HK	Hybrid	Histidine kinase, Hybrid contains 2 Response_reg,1 PAS_4,1 HisKA,1 HATPase_c	0
XACM_1256	1407612	1408742	-	two-component system regulatory protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
XACM_1259	1410141	1413320	-	two-component system sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,1 HisKA,1 HATPase_c,3 Response_reg	3
XACM_1260	1413480	1414643	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
XACM_1261	1414636	1415004	+	two-component system regulatory protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_1311	1477238	1477954	-	two-component system response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 Hpt	0
XACM_1585	1779433	1780146	+	two-component LuxR family response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_1688	1896930	1899785	+	sensory box histidine kinase/response regulator                     hybrid	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_4,1 PAS,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	1
XACM_1689	1899900	1900274	-	response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_1691	1902046	1904118	+	histidine kinase-response regulator hybrid                     protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
XACM_1820	2041965	2042531	-	two-component system regulatory protein	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
XACM_1821	2042528	2043754	-	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	5
XACM_1898	2139925	2141061	+	response regulator	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
XACM_1900	2141700	2143880	+	sensory/regulatory protein RpfC	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	6
XACM_1910	2157601	2158677	-	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
XACM_1934	2202704	2204713	-	Chemotaxis protein histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
XACM_1935	2204747	2205112	-	chemotaxis response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_1951	2219350	2221008	-	chemotaxis protein CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
XACM_1953	2221637	2222029	-	chemotaxis response regulator CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_1992	2267769	2268152	-	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_1994	2269781	2270413	-	LuxR family two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_2012	2286726	2287670	-	chemotaxis signal transduction protein	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
XACM_2016	2289558	2290784	+	two-component system sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
XACM_2017	2290899	2292620	-	two-component system sensor-response regulator                     hybrid protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 GGDEF,1 EAL,1 Response_reg	0
XACM_2018	2292624	2294717	-	sensory box histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 PAS,1 HisKA_3,1 HATPase_c	3
XACM_2068	2353435	2354007	+	histidine kinase-response regulator hybrid                     protein	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
XACM_2082	2381102	2381713	-	two-component system response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
XACM_2083	2381710	2382786	-	two-component system sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
XACM_2089	2393332	2394372	+	two-component system sensor protein	PP	HisKa	Phosphotransfer protein contains 1 His_kinase	0
XACM_2090	2394369	2395073	+	two-component system regulatory protein	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
XACM_2123	2432723	2435155	-	two-component VirA-like sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
XACM_2125	2436168	2436947	-	VirG-like two-component system regulatory                     protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_2160	2472016	2475429	-	two-component system sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 2 GAF,2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	1
XACM_2161	2475632	2476012	-	two-component system regulatory protein	RR	unclassified	Response regulator, unclassified contains 1 REC	0
XACM_2211	2521545	2522192	+	LuxR/UhpA family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_2237	2553061	2556114	-	periplasmic ligand-binding sensor                     domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	1
XACM_2239	2557061	2557705	-	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_2240	2557702	2558685	-	two component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	1
XACM_2255	2574852	2578157	+	two-component system sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	2
XACM_2257	2578150	2578881	+	two-component system LuxR family regulatory                     protein	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_2403	2730876	2732945	+	PAS/PAC domain-containing protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS_4,1 GGDEF,1 EAL	0
XACM_2461	2799416	2800714	+	two-component system response regulator	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
XACM_2471	2812776	2816870	+	two-component system sensor protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 CHASE,1 PAS_4,1 PAS,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	3
XACM_2472	2816901	2817887	+	two-component system regulatory protein	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
XACM_2536	2916874	2918496	-	histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_3, 1 HisKA_MA, 1 HATPase_c, 1 Response_reg, 	0
XACM_2609	2999349	3000377	+	signal transduction protein with a C-terminal                     ATPase domain	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	4
XACM_2747	3161504	3162193	+	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_2748	3162190	3163383	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
XACM_2800	3221106	3222554	-	sensory histidine kinase CreC	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
XACM_2801	3222603	3223307	-	DNA-binding response regulator CreB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_2806	3230023	3232032	+	chemotaxis histidine protein kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
XACM_2809	3234804	3236087	+	two-component system response regulator	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
XACM_2811	3236895	3238022	+	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
XACM_2950	3380806	3384351	-	histidine kinase-response regulator hybrid                     protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	1
XACM_2951	3384745	3388314	-	histidine kinase-response regulator hybrid                     protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	2
XACM_2952	3388519	3392046	-	histidine kinase-response regulator hybrid                     protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	1
XACM_2953	3392348	3395923	-	histidine kinase-response regulator hybrid                     protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	1
XACM_3017	3474539	3481756	-	PilL protein	HK	CheA	Histidine kinase, CheA contains 4 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg	0
XACM_3020	3484476	3484838	-	PilH protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_3021	3484856	3485257	-	pilus protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_3046	3519348	3519752	+	response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_3054	3527667	3528026	-	two-component system regulatory protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
XACM_3055	3528023	3529030	-	two-component system sensor protein	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_4,1 HWE_HK	1
XACM_3135	3628961	3630574	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
XACM_3136	3630841	3632295	+	two-component system regulatory protein	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
XACM_3142	3638459	3639793	-	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
XACM_3143	3639786	3640463	-	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_3225	3733530	3734726	+	GAF domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 GAF, 1 HisKA_MA, 1 HATPase_c, 	0
XACM_3333	3853608	3854756	+	two-component system response regulator	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HDOD	0
XACM_3365	3903631	3906276	+	sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	2
XACM_3372	3912090	3912728	-	LuxR family two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_3374	3913989	3915374	-	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	3
XACM_3375	3915367	3916068	-	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_3537	4125108	4126451	+	two-component system regulatory protein	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
XACM_3570	4155528	4157264	+	two-component system sensor histidine                     kinase-response regulator hybrid protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	6
XACM_3581	4166007	4168043	-	two-component system sensor histidine                     kinase-response regulator hybrid protein	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
XACM_3614	4200920	4201696	-	two-component system response regulator                     LytR/AlgR family	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
XACM_3615	4201693	4203000	-	two-component system sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	2
XACM_3622	4208638	4212180	-	methylase of chemotaxis methyl-accepting                     protein	HK	Classic	Probable incomplete histidine kinase contains 1 CheB_methylest,1 MeTrc,1 H-kinase_dim,1 PAS_3,1 HWE_HK	0
XACM_3623	4212389	4212769	+	two-component system response regulator	RR	unclassified	Response regulator, unclassified contains 1 REC	0
XACM_3625	4213002	4214285	-	sigma-54 dependent response regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
XACM_3727	4313182	4313979	-	two-component system response regulator	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
XACM_3845	4444104	4444769	+	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_3846	4444766	4445950	+	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
XACM_3862	4459815	4460417	-	LuxR family two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_3863	4460502	4461677	-	two-component system sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
XACM_3892	4488923	4490293	-	two-component system sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
XACM_3893	4490368	4491051	-	two-component system regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
XACM_4050	4687215	4687883	+	LuxR family two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
XACM_4065	4702055	4705504	-	Na+/proline, Na+/panthothenate symporter	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	13
XACM_4154	4836248	4837492	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	0
