#Vibrio nigripulchritudo (102 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
VIBNI_A0122	113424	116219	-	Signal transduction histidine-protein kinase                     barA	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	1
VIBNI_A0272	285289	286722	-	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	4
VIBNI_A0273	286719	287411	-	Two-component response regulator GltR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A0282	305338	307701	+	Aerobic respiration control sensor protein arcB	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
VIBNI_A0284	308233	308949	-	Aerobic respiration control protein arcA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A0364	391365	393677	+	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     PROTEIN KINASE	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	3
VIBNI_A0372	400361	401083	-	putative Response regulator of the LytR family	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
VIBNI_A0373	401077	402765	-	putative Autolysin sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	7
VIBNI_A0405	437984	438673	+	Phosphate regulon transcriptional regulatory                     protein phoB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A0406	438698	440005	+	Phosphate regulon sensor protein phoR	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
VIBNI_A0581	636621	637844	-	putative TWO-COMPONENT SYSTEM SENSOR HISTIDINE                     KINASE/RESPONSE REGULATOR fused with Diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
VIBNI_A0618	672182	673528	-	putative Signal receiver domain cheY protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
VIBNI_A0720	770137	771177	+	Sensor protein FleS	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
VIBNI_A0721	771177	772592	+	Transcriptional activator FleR	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
VIBNI_A0743	791522	791890	+	Chemotaxis protein cheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
VIBNI_A0745	792681	794915	+	Chemotaxis protein CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
VIBNI_A0746	794929	796068	+	Chemotaxis response regulator protein-glutamate                     methylesterase of group 1 operon	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
VIBNI_A0782	832387	833127	-	putative Signal transduction response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A0811	868142	869245	+	putative Response regulator	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE	0
VIBNI_A0837	891927	893579	-	putative SENSORY TRANSDUCTION HISTIDINE KINASE	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
VIBNI_A0838	893592	894311	-	Transcriptional regulatory protein rstA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A0883	944773	946089	+	putative Signal transduction histidine kinase	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
VIBNI_A0914	978090	979439	+	Luminescence regulatory protein luxO	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
VIBNI_A0915	979470	979817	+	Phosphorelay protein luxU	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
VIBNI_A0952	1017620	1019131	+	putative TWO COMPONENT HISTIDINE KINASE	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 PAS,1 HisKA,1 HATPase_c	0
VIBNI_A0953	1019135	1019746	+	Transcriptional regulatory protein fixJ	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
VIBNI_A1036	1102615	1105293	+	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     PROTEIN KINASE	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	3
VIBNI_A1037	1105280	1106476	+	putative SENSORY TRANSDUCTION HISTIDINE KINASE                     (DHKB)	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
VIBNI_A1046	1116821	1117495	+	Transcriptional activator protein czcR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A1047	1117479	1118753	+	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
VIBNI_A1049	1120898	1121875	-	putative TWO-COMPONENT SYSTEM SENSOR HISTIDINE                     KINASE/RESPONSE REGULATOR	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
VIBNI_A1054	1128382	1129734	+	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 cNMP_binding, 1 HisKA_MA, 1 HATPase_c, 	0
VIBNI_A1055	1129721	1130194	+	putative TWO-COMPONENT SYSTEM SENSOR HISTIDINE                     KINASE/RESPONSE REGULATOR	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
VIBNI_A1125	1213411	1213908	-	putative TWO-COMPONENT SYSTEM SENSOR HISTIDINE                     KINASE/RESPONSE REGULATOR	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
VIBNI_A1126	1213905	1215848	-	putative TWO COMPONENT HISTIDINE KINASE	HK	Classic	Histidine kinase, Classic contains 1 cNMP_binding, 1 HisKA_MA, 1 HATPase_c, 	0
VIBNI_A1129	1218705	1219445	+	Transcriptional regulatory protein ompR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A1130	1219449	1221917	+	putative TWO COMPONENT HISTIDINE KINASE	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	1
VIBNI_A1306	1394404	1395048	+	Response regulator uvrY	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
VIBNI_A1323	1412593	1413261	-	Glycerol metabolism activator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
VIBNI_A1325	1414776	1416695	+	putative SENSOR HISTIDINE KINASE	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
VIBNI_A1470	1572195	1576673	+	putative Sensor protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,2 PAS,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
VIBNI_A1471	1576723	1577460	+	putative CheY-like receiver	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
VIBNI_A1484	1590119	1591624	-	Regulatory protein luxO	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
VIBNI_A1485	1591819	1594092	-	putative Signal transduction histidine kinase                     SypF	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
VIBNI_A1486	1594102	1595637	-	putative Response regulator SypE	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE	0
VIBNI_A1566	1663721	1666912	+	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     PROTEIN KINASE (DHKK, DHKJ)	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	0
VIBNI_A1567	1666912	1668033	+	putative CheY-like fused with Metal-dependent                     phosphohydrolase	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
VIBNI_A1600	1698232	1699413	-	putative diguanylate phosphodiesterase (EAL                     domain) with PAS/PAC sensor	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
VIBNI_A1661	1745864	1746826	+	putative Chemotaxis protein CheC--inhibitor of                     MCP methylation	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
VIBNI_A1677	1759504	1760991	+	putative sigma-54 dependent response regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
VIBNI_A1678	1760981	1763014	+	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
VIBNI_A1720	1799839	1801545	-	putative TWO COMPONENT HISTIDINE KINASE	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
VIBNI_A1749	1828296	1830362	+	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     PROTEIN KINASE (DHKK, DHKJ)	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
VIBNI_A1847	1954223	1954909	-	putative Transcriptional regulatory protein                     CitB, DpiA	RR	CitT	Response regulator, CitT family contains 1 Response_reg,1 CitT	0
VIBNI_A1848	1954906	1956513	-	putative SENSOR KINASE DPIB	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	2
VIBNI_A1857	1963421	1964050	-	putative Response regulator containing a                     CheY-like receiver domain and an HTH DNA-binding domain	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
VIBNI_A1858	1964047	1965432	-	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 Cache_2,1 HisKA_3,1 HATPase_c	2
VIBNI_A1982	2114228	2115943	-	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     PROTEIN KINASE (DHKK, DHKJ)	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	1
VIBNI_A2027	2160862	2162217	-	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 Cache_2,1 HisKA_3,1 HATPase_c	2
VIBNI_A2043	2176952	2181361	+	putative Signal transduction histidine kinase,                     nitrogen specific with PBPb domain	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PBPb,1 SBP_bac_3,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
VIBNI_A2044	2181358	2182650	+	putative CheY-like receiver	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
VIBNI_A2045	2182665	2183852	+	putative Signal receiver domain REC fused with                     EAL domain	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
VIBNI_A2075	2215548	2216720	-	putative Signal transduction histidine kinase                     fused with Metal dependent phosphohydrolase	PP	HPt	Phosphotransfer protein contains 1 Hpt,1 HD	0
VIBNI_A2092	2226993	2229788	+	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     PROTEIN KINASE (DHKK, DHKJ)	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	1
VIBNI_A2110	2250416	2251129	-	TorCAD operon transcriptional regulatory protein                     torR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A2217	2360179	2360838	+	FeuP protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A2218	2360828	2362177	+	putative Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	2
VIBNI_A2231	2376195	2379713	+	putative Signal transduction histidine kinase                     fused with Methyl-accepting/ Phosphatase (HAMP) domain	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	3
VIBNI_A2251	2403692	2406118	-	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     PROTEIN KINASE	HK	Hybrid	Histidine kinase, Hybrid contains 1 Cache_1,1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	1
VIBNI_A2338	2488683	2489621	-	putative CheY/CheW-like protein	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
VIBNI_A2430	2585145	2586917	+	putative Signal transduction histidine kinase                     regulating C4-dicarboxylate transport system	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
VIBNI_A2431	2586926	2588263	+	C4-dicarboxylate transport transcriptional                     regulatory protein dctD	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
VIBNI_A2448	2601538	2602974	-	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
VIBNI_A2449	2602978	2603706	-	Transcriptional regulatory protein ompR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A2452	2607551	2610040	+	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     PROTEIN KINASE	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	3
VIBNI_A2460	2615245	2616468	-	putative CheY-like receiver fused with EAL                     domain	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
VIBNI_A2461	2616581	2619673	+	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     PROTEIN KINASE (DHKK, DHKJ)	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	1
VIBNI_A2464	2622544	2623170	-	putative Signal transduction response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
VIBNI_A2465	2623145	2624176	-	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	2
VIBNI_A2644	2810062	2810988	-	putative CheY/CheW hybrid protein CheV	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
VIBNI_A2674	2839886	2840566	+	Putative two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A2675	2840566	2841804	+	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
VIBNI_A2757	2923340	2926351	-	putative TWO-COMPONENT SENSOR PROTEIN HISTIDINE                     KINASE	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	8
VIBNI_A2758	2926581	2927291	+	putative two-component regulatory system                     response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A2760	2928595	2929788	+	putative diguanylate cyclase/phosphodiesterase                     (GGDEF & EAL domains) with PAS/PAC sensor(s)	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
VIBNI_A2820	2994166	2997501	+	putative sensor histidine kinase/response                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 PAS	2
VIBNI_A2899	3088490	3089851	-	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
VIBNI_A2900	3089838	3090500	-	Transcriptional regulatory protein qseB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A2941	3133586	3134392	+	putative two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A2942	3134389	3135834	+	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
VIBNI_A3081	3285932	3287458	+	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	3
VIBNI_A3257	3429460	3430152	+	Transcriptional regulatory protein cpxR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
VIBNI_A3258	3430164	3431519	+	Sensor protein cpxA	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
VIBNI_A3282	3450889	3452949	+	putative Signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
VIBNI_A3283	3452931	3454283	+	C4-dicarboxylate transport transcriptional                     regulatory protein dctD	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
VIBNI_A3287	3458978	3459613	+	putative Signal transduction response regulator                     fused with Transcriptional regulator, LuxR family	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
VIBNI_A3293	3464092	3467523	-	putative Sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	13
VIBNI_A3430	3605902	3607029	-	putative Flp pilus assembly protein, ATPase                     CpaE	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
VIBNI_A3480	3664637	3665692	+	Nitrogen regulation protein NR(II)	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
VIBNI_A3481	3665723	3667135	+	Nitrogen regulation protein NR(I)	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
VIBNI_A3722	3935612	3936919	-	Osmolarity sensor protein envZ	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
VIBNI_A3723	3937044	3937763	-	Transcriptional regulatory protein ompR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
