#Thiocystis violascens DSM 198 (155 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
Thivi_0032	29040	29729	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Thivi_0033	29736	30899	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Thivi_0038	35294	38827	+	histidine kinase,histidine kinase,extracellular                     solute-binding protein, family 3	HK	Classic	Histidine kinase, Classic contains 2 SBP_bac_3,1 HisKA,1 HATPase_c	2
Thivi_0039	38824	41052	+	diguanylate cyclase	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 GGDEF,1 EAL	0
Thivi_0064	70943	73165	-	PAS domain-containing protein	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	1
Thivi_0076	82764	85487	-	osmosensitive K+ channel histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
Thivi_0201	207501	210110	-	PAS domain S-box/diguanylate cyclase (GGDEF)                     domain-containing protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 2 PAS,1 GGDEF,1 EAL,1 Response_reg	0
Thivi_0289	299170	301359	+	PAS domain-containing protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	0
Thivi_0290	301446	302081	+	response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Thivi_0294	306787	307473	+	phosphate regulon transcriptional regulatory                     protein PhoB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Thivi_0295	307512	308837	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
Thivi_0308	321057	321425	+	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_0310	321789	323993	+	chemotaxis protein histidine kinase-like                     protein	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Thivi_0314	327173	327538	+	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_0317	329190	331214	+	chemotaxis protein histidine kinase-like                     protein	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Thivi_0320	332721	333839	+	chemotaxis response regulator containing a                     CheY-like receiver domain and a methylesterase domain	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Thivi_0323	337721	338803	+	chemotaxis response regulator containing a                     CheY-like receiver domain and a methylesterase domain	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Thivi_0326	340379	340795	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_0327	340792	343500	+	chemotaxis protein histidine kinase-like                     protein	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Thivi_0329	343938	344312	+	CheY-like receiver domain-containing protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_0336	348727	349791	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
Thivi_0337	349788	350156	+	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_0376	387503	387877	+	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_0380	389941	392121	+	chemotaxis protein histidine kinase-like                     protein	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	1
Thivi_0381	392125	393198	+	chemotaxis response regulator containing a                     CheY-like receiver domain and a methylesterase domain	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Thivi_0392	401855	402778	+	chemotaxis signal transduction protein	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
Thivi_0413	423349	426624	+	PAS domain-containing protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	0
Thivi_0560	586258	586998	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Thivi_0561	587291	588526	+	EAL domain-containing protein	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
Thivi_0562	588751	592998	+	PAS domain-containing protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 MASE1, 2 PAS, 1 PAS_3, 1 GAF, 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 1 Response_reg, 	7
Thivi_0563	593054	593470	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_0644	682969	685692	-	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,2 Response_reg	3
Thivi_0646	686830	687960	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HDOD	0
Thivi_0647	688213	690285	-	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,2 Response_reg	0
Thivi_0648	690282	692411	-	diguanylate cyclase	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS_3,1 GGDEF,1 EAL	0
Thivi_0649	692558	692911	+	HPt domain-containing protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
Thivi_0673	718277	724417	+	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 3 PAS,1 PAS_3,2 GAF,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	1
Thivi_0693	744458	749032	+	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 Cache_2,1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	3
Thivi_0694	749125	750048	+	diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
Thivi_0706	763904	767527	+	PAS domain S-box/diguanylate cyclase (GGDEF)                     domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt,1 GGDEF	1
Thivi_0781	847070	848146	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Thivi_0782	848143	848841	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Thivi_0849	918753	921347	+	PAS domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE4,1 PAS,1 HisKA,1 HATPase_c	2
Thivi_0850	921353	921973	+	response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Thivi_0871	938523	939161	-	response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Thivi_1009	1097004	1101320	-	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 2 PAS_4,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	4
Thivi_1010	1101317	1102447	-	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Thivi_1116	1212549	1214162	+	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Thivi_1117	1214177	1214866	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
Thivi_1202	1290694	1291779	+	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Thivi_1203	1291798	1293354	+	response regulator containing a CheY-like                     receiver domain and a GGDEF domain	HK	Hybrid	Histidine kinase, Hybrid contains 2 Response_reg,1 HisKA,1 HATPase_c	0
Thivi_1204	1293394	1293768	+	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_1205	1293814	1299336	+	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 SBP_bac_3,1 PAS,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	4
Thivi_1206	1299487	1303920	-	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_4,1 PAS,1 GAF,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	0
Thivi_1207	1303917	1305053	-	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Thivi_1213	1310400	1312172	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 SpoIIE	0
Thivi_1215	1313104	1317147	+	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS,2 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	1
Thivi_1216	1317132	1318247	-	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Thivi_1217	1318268	1319815	-	PAS domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c	0
Thivi_1218	1319886	1320932	-	chemotaxis response regulator containing a                     CheY-like receiver domain and a methylesterase domain	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Thivi_1224	1326553	1328832	-	chemotaxis protein histidine kinase-like                     protein	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Thivi_1225	1328867	1329232	-	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_1257	1365280	1367490	+	diguanylate cyclase	RR	PleD_VieA	Response regulator, PleD_VieA family contains 2 Response_reg,1 GGDEF,1 EAL	0
Thivi_1313	1426395	1430585	-	PAS domain-containing protein	RR	VieA	Response regulator, VieA family contains 3 Response_reg,1 PAS_3,1 GAF,1 Hpt,1 EAL	0
Thivi_1315	1430676	1433108	-	signal transduction histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
Thivi_1319	1436846	1438339	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS,1 HisKA,1 HATPase_c	0
Thivi_1320	1438343	1439176	+	response regulator containing a CheY-like                     receiver domain and a GGDEF domain	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
Thivi_1321	1439181	1442513	+	PAS domain S-box/diguanylate cyclase (GGDEF)                     domain-containing protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,2 GAF,1 PAS_3,1 GGDEF,1 EAL	0
Thivi_1437	1566277	1568184	-	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	1
Thivi_1440	1569566	1570261	-	response regulator containing a CheY-like                     receiver domain and an HTH DNA-binding domain	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Thivi_1506	1650968	1653232	-	molecular chaperone of HSP90 family	HK	Classic	Histidine kinase, Classic contains 1 B12-binding, 1 HisKA_MA, 1 HATPase_c, 	0
Thivi_1604	1742817	1743455	+	response regulator containing a CheY-like                     receiver domain and an HTH DNA-binding domain	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Thivi_1718	1863365	1864495	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Thivi_1719	1864557	1865546	-	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Thivi_1720	1865549	1871530	-	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 5 PAS_4,2 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	1
Thivi_1743	1895338	1897371	+	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	2
Thivi_1830	1990890	1993511	+	PAS domain S-box/diguanylate cyclase (GGDEF)                     domain-containing protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 2 Response_reg,1 PAS,1 GGDEF,1 EAL	0
Thivi_1831	1993532	1996879	+	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 2 PAS_4,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	3
Thivi_1863	2028286	2030841	-	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	1
Thivi_1926	2105293	2107431	+	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	6
Thivi_2107	2297415	2297789	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_2108	2297786	2300563	-	Na+/proline symporter	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	13
Thivi_2110	2300851	2302365	+	bacteriophytochrome (light-regulated signal                     transduction histidine kinase)	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Thivi_2111	2302487	2304550	+	PAS domain S-box/diguanylate cyclase (GGDEF)                     domain-containing protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS,1 GGDEF,1 EAL	0
Thivi_2148	2347594	2349051	+	bacteriophytochrome (light-regulated signal                     transduction histidine kinase)	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Thivi_2149	2349102	2349563	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_2150	2349560	2353513	+	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 2 Response_reg,3 PAS,1 HisKA,1 HATPase_c,1 Hpt	0
Thivi_2222	2425987	2426754	+	response regulator of the LytR/AlgR family	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
Thivi_2338	2555374	2558601	-	PAS domain S-box/diguanylate cyclase (GGDEF)                     domain-containing protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 2 Response_reg,1 PAS_3,1 PAS,1 GGDEF,1 EAL	0
Thivi_2339	2558606	2559037	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_2340	2559034	2560971	-	PAS domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE,1 PAS_4,1 HisKA,1 HATPase_c	1
Thivi_2378	2598165	2599202	-	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Thivi_2379	2599225	2602713	-	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 2 PAS_3,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	0
Thivi_2441	2669648	2673676	+	PAS domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 GAF,3 PAS_4,1 PAS,1 PAC,1 PAS_3,1 HisKA_2,1 HATPase_c	0
Thivi_2442	2673673	2674344	+	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
Thivi_2465	2707583	2709208	+	signal transduction histidine kinase,                     nitrate/nitrite-specific	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	2
Thivi_2466	2709196	2709852	+	response regulator containing a CheY-like                     receiver domain and an HTH DNA-binding domain	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Thivi_2573	2821384	2824659	+	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	0
Thivi_2575	2827807	2829567	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	0
Thivi_2605	2858443	2860881	+	PAS domain-containing protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	1
Thivi_2794	3062601	3064025	-	nitrogen regulation protein NR(I)	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Thivi_2795	3064018	3065097	-	signal transduction histidine kinase, nitrogen                     specific	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
Thivi_3000	3287681	3291193	+	PAS domain-containing protein	HK	Hybrid	Histidine kinase, Hybrid contains 4 PAS_3,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
Thivi_3193	3498154	3499521	-	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
Thivi_3194	3499518	3501725	-	signal transduction histidine kinase involved in                     nitrogen fixation and metabolism regulation	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	4
Thivi_3250	3559638	3560924	+	diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
Thivi_3289	3594902	3596536	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	5
Thivi_3303	3610399	3616017	-	chemotaxis protein histidine kinase-like                     protein	HK	CheA	Histidine kinase, CheA contains 3 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg	0
Thivi_3306	3618849	3619283	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_3307	3619391	3619828	-	response regulator containing a CheY-like                     receiver domain and a GGDEF domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_3352	3664555	3666594	-	response regulator containing a CheY-like                     receiver domain and a GGDEF domain	RR	VieA	Response regulator, VieA family contains 2 Response_reg,1 EAL	0
Thivi_3393	3705706	3707346	-	nitrogen fixation negative regulator NifL	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	0
Thivi_3454	3773230	3775491	-	response regulator containing a CheY-like                     receiver domain and a GGDEF domain	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 GGDEF,1 EAL	0
Thivi_3578	3911944	3913293	-	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Thivi_3689	4026041	4026922	-	PAS domain-containing protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 PAS	0
Thivi_3690	4026919	4029381	-	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	2
Thivi_3691	4029415	4031295	-	peroxiredoxin	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Thivi_3692	4031292	4032008	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Thivi_3718	4052241	4052864	-	response regulator containing a CheY-like                     receiver domain and an HTH DNA-binding domain	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Thivi_3719	4052855	4053958	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_3,1 HATPase_c	0
Thivi_3770	4101853	4105029	+	PAS domain-containing protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,2 Response_reg	2
Thivi_3859	4201879	4203402	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Thivi_3860	4203395	4204126	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Thivi_3904	4250560	4252209	-	putative transcriptional regulator with HTH                     domain	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
Thivi_3948	4296958	4298292	-	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Thivi_3949	4298442	4299977	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
Thivi_3991	4343819	4347295	+	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	3
Thivi_3992	4347285	4348205	+	diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
Thivi_4018	4373139	4374062	-	diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
Thivi_4019	4374046	4377777	-	PAS domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE,2 PAS_4,2 PAS_3,1 HisKA,1 HATPase_c	1
Thivi_4079	4435168	4436919	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	0
Thivi_4106	4471026	4472315	+	PAS domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA_3,1 HATPase_c	1
Thivi_4107	4472312	4472944	+	response regulator containing a CheY-like                     receiver domain and an HTH DNA-binding domain	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Thivi_4110	4475274	4475675	+	response regulator of citrate/malate metabolism	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_4112	4476875	4477243	+	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Thivi_4114	4477577	4479808	+	chemotaxis protein histidine kinase-like                     protein	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Thivi_4121	4487305	4488399	+	chemotaxis response regulator containing a                     CheY-like receiver domain and a methylesterase domain	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Thivi_4163	4531307	4532404	-	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Thivi_4164	4532517	4535672	-	signal transduction histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	1
Thivi_4248	4609634	4611613	+	signal transduction histidine kinase,                     nitrate/nitrite-specific	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	1
Thivi_4249	4611597	4612250	+	response regulator containing a CheY-like                     receiver domain and an HTH DNA-binding domain	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Thivi_4259	4623995	4625356	-	PEP-CTERM-box response regulator transcription                     factor	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Thivi_4260	4625371	4627446	-	putative PEP-CTERM system histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	9
Thivi_4303	4679051	4681762	+	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Cache_1,1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	3
Thivi_4304	4681762	4683432	+	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 2 Response_reg,1 HisKA,1 HATPase_c	0
Thivi_4335	4710988	4711686	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Thivi_4336	4711683	4713020	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Thivi_4356	4735904	4736926	-	response regulator containing a CheY-like                     receiver domain and an HTH DNA-binding domain	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Thivi_4408	4776137	4776610	+	hypothetical protein	PP	HisKa	Phosphotransfer protein contains 1 HisKA_3	0
Thivi_4453	4814263	4815597	-	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Thivi_4454	4815693	4817303	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
Thivi_4463	4825327	4826751	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Thivi_4464	4826748	4827416	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Thivi_4474	4834199	4834864	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Thivi_4475	4834908	4836305	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
