#Synechococcus sp. JA-2-3Ba(2-13) (55 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
CYB_0028	34638	37646	-	sensory box histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 GAF,1 HisKA,1 HATPase_c	1
CYB_0174	186762	187454	-	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CYB_0249	264506	265258	+	DNA-binding response regulator RpaA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CYB_0283	297869	298279	+	response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CYB_0352	369353	369718	+	response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CYB_0507	518503	523083	-	sensory box histidine kinase/response regulator	HK	Unorthodox	Histidine kinase, Unorthodox contains 2 GAF,1 CHASE3,1 PAS_4,1 PAS,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	0
CYB_0712	727768	728829	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
CYB_0858	891888	893147	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
CYB_0917	953731	954756	+	response regulator	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
CYB_0965	1001414	1002196	-	sensor histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HisKA	0
CYB_0987	1021950	1023713	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 GAF,1 HisKA,1 HATPase_c	0
CYB_1008	1047612	1048967	-	response regulator	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
CYB_1044	1084594	1085283	+	LuxR family DNA-binding response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CYB_1130	1167880	1168899	-	response regulator	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
CYB_1242	1291088	1291684	-	DNA-binding response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CYB_1249	1296879	1297727	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
CYB_1343	1411475	1412218	-	DNA-binding response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CYB_1344	1412287	1413045	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
CYB_1345	1413155	1414633	-	sensor histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HisKA	0
CYB_1354	1422603	1423346	+	response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CYB_1410	1478037	1479386	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
CYB_1446	1516617	1518803	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE2, 1 HisKA_MA, 1 HATPase_c, 	4
CYB_1453	1526591	1529545	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 3 GAF, 1 HisKA_MA, 1 HATPase_c, 	0
CYB_1639	1706804	1708045	-	sensor histidine kinase/response regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
CYB_1640	1708080	1712408	-	sensory box histidine kinase/response regulator	HK	Unorthodox	Histidine kinase, Unorthodox contains 4 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	1
CYB_1653	1730309	1733377	+	sensory box histidine kinase	HK	Classic	Histidine kinase, Classic contains 5 PAS_3,1 HisKA_2,1 HATPase_c	0
CYB_1654	1733374	1734384	+	response regulator	HK	Classic	Probable incomplete histidine kinase contains 1 Response_reg,1 HisKA	0
CYB_1679	1755423	1756076	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 GAF, 1 HisKA_MA, 1 HATPase_c, 	0
CYB_1740	1822506	1823747	-	response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
CYB_1773	1856514	1860257	-	sensory box histidine kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS_4,1 PAS,2 PAS_3,2 GAF,1 HisKA,1 HATPase_c	1
CYB_1895	1981377	1982510	-	adaptive-response sensory kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
CYB_1934	2020574	2025991	-	sensor histidine kinase/response regulator	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg	0
CYB_1937	2029601	2029966	-	response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CYB_1938	2029963	2030340	-	response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CYB_1939	2030529	2031671	-	response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
CYB_2001	2106782	2107456	-	response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CYB_2031	2133374	2134093	-	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CYB_2060	2157387	2158043	-	response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
CYB_2277	2384145	2385239	-	response regulator	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
CYB_2421	2517517	2519619	+	sensory box histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c	3
CYB_2465	2562273	2564777	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 2 GAF,1 HisKA,1 HATPase_c	0
CYB_2471	2568126	2569874	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	0
CYB_2501	2595567	2596268	+	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CYB_2553	2659064	2659702	+	LuxR family DNA-binding response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CYB_2561	2664997	2665737	+	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CYB_2689	2776914	2777723	-	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CYB_2722	2813527	2814921	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
CYB_2723	2815070	2815759	-	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CYB_2748	2843127	2844371	+	response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
CYB_2749	2844419	2844793	+	response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CYB_2752	2847737	2850508	+	sensor histidine kinase/response regulator	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg	0
CYB_2791	2887174	2888088	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
CYB_2795	2893312	2895972	+	sensory box histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 PAS_4,2 GAF,1 HisKA,1 HATPase_c	0
CYB_2856	2952637	2953380	+	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CYB_2926	3024715	3025836	-	response regulator	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE	0
