#Sulfuricella denitrificans skB26 (90 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
SCD_n00013	15643	17769	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
SCD_n00014	17770	19044	+	two component, sigma54 specific, Fis family                     transcriptional regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
SCD_n00196	206897	207886	+	signal transduction histidine kinase NtrB	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
SCD_n00197	207883	209283	+	nitrogen metabolism transcriptional regulator                     NtrC	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
SCD_n00220	231233	233296	-	response regulator receiver modulated                     diguanylate cyclase/phosphodiesterase with PAS/PAC                     sensor(S)	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS,1 GGDEF,1 EAL	0
SCD_n00221	233384	238336	-	hypothetical protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 PAS,2 PAS_4,2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	3
SCD_n00282	299292	300575	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
SCD_n00283	300763	301458	-	phosphate regulon transcriptional regulatory                     protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n00336	351747	353162	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	2
SCD_n00337	353155	353805	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
SCD_n00342	359465	360139	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
SCD_n00343	360136	361350	-	GAF sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_3,1 HATPase_c	0
SCD_n00405	426629	427339	+	transcriptional regulatory protein OmpR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n00407	428013	428633	+	periplasmic sensor signal transduction histidine                     kinase	PP	HisKa	Phosphotransfer protein contains 1 HisKA	0
SCD_n00471	499136	500497	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
SCD_n00472	500494	501156	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n00718	723577	724428	-	putative PAS/PAC sensor protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 PAC	0
SCD_n00719	724747	727296	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
SCD_n00776	776913	778019	-	metal-dependent phosphohydrolase	PP	HPt	Phosphotransfer protein contains 1 Hpt,1 HD	0
SCD_n00777	778245	780401	+	similar to histidine kinase (C-terminus) (fusion                     protein)	HK	Classic	Histidine kinase, Classic contains 1 HDOD,1 HisKA,1 HATPase_c	3
SCD_n00778	780668	782662	+	response regulator receiver modulated PAS/PAC                     sensor-containing diguanylate cyclase/phosphodiesterase	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS,1 GGDEF,1 EAL	0
SCD_n00869	871944	872606	+	two component transcriptional regulator, winged                     helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n00870	872603	873898	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
SCD_n00933	941557	942216	-	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
SCD_n00934	942213	943877	-	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS_4,1 HisKA_3,1 HATPase_c	0
SCD_n00962	971259	972245	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
SCD_n01147	1157574	1161134	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE,3 PAS_4,2 PAS,1 HisKA,1 HATPase_c	3
SCD_n01148	1161131	1161562	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
SCD_n01149	1161570	1164929	+	PAS domain S-box/diguanylate cyclase (GGDEF)                     domain-containing protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 2 Response_reg,1 PAS_3,1 GAF,1 PAS,1 GGDEF,1 EAL	0
SCD_n01219	1237616	1239448	-	chemotaxis histidine kinase CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	2
SCD_n01221	1240249	1240638	-	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
SCD_n01222	1240746	1241678	-	chemotaxis signal transduction protein	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
SCD_n01223	1241691	1242644	-	chemotaxis signal transduction protein	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
SCD_n01224	1242981	1244147	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	0
SCD_n01225	1244177	1245511	+	two component sigma-54 specific Fis family                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
SCD_n01297	1305101	1307215	+	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	9
SCD_n01298	1307234	1308586	+	two component sigma-54 specific Fis family                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
SCD_n01413	1423848	1426784	-	hypothetical protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS_4,1 PAS,1 GGDEF,1 EAL	0
SCD_n01434	1445491	1446936	-	putative two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
SCD_n01435	1446933	1447658	-	transcriptional regulatory protein ompR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n01466	1473649	1477404	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 4 PAS,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg	1
SCD_n01467	1477406	1477801	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
SCD_n01468	1477815	1478180	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
SCD_n01469	1478194	1479825	+	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Hpt,2 Response_reg,1 GGDEF	0
SCD_n01506	1522103	1524037	+	response regulator	RR	RpfG	Response regulator, RpfG family contains 1 HDOD,1 Response_reg,1 GGDEF	0
SCD_n01517	1533025	1533726	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
SCD_n01578	1591555	1592277	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
SCD_n01579	1592383	1593069	-	response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n01733	1757422	1757844	-	hypothetical protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
SCD_n01765	1787822	1790410	+	hypothetical protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 REC,1 Response_reg,1 Hpt	2
SCD_n01835	1857248	1857967	+	osmolarity response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n01836	1858134	1859267	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SCD_n01861	1881272	1882804	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 PAS_4,1 HisKA,1 HATPase_c	0
SCD_n01862	1882801	1883268	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
SCD_n01863	1883265	1885751	+	response regulator receiver modulated PAS/PAC                     sensor-containing diguanylate cyclase/phosphodiesterase	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,2 PAS_4,1 GGDEF,1 EAL	0
SCD_n02054	2097122	2098510	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	1
SCD_n02055	2098531	2099208	-	two component transcriptional regulator, winged                     helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n02075	2113603	2116032	-	integral membrane sensor hybrid histidine                     kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
SCD_n02101	2146862	2148241	-	two component, sigma54 specific, Fis family                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
SCD_n02102	2148238	2149839	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	5
SCD_n02252	2284215	2284907	+	two component heavy metal response                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n02253	2284904	2286298	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SCD_n02259	2291832	2292437	+	response regulator NasT	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
SCD_n02279	2320196	2323411	-	hypothetical protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 HAMP,1 PAS,1 GGDEF,1 EAL,1 Response_reg	0
SCD_n02280	2323675	2325147	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	0
SCD_n02286	2328087	2328863	+	response regulator receiver protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
SCD_n02288	2329753	2332287	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 GAF, 1 HisKA_MA, 1 HATPase_c, 	1
SCD_n02289	2332293	2332913	+	response regulator TtrR	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
SCD_n02290	2333026	2336982	+	response regulator receiver modulated PAS/PAC                     sensor-containing diguanylate cyclase/phosphodiesterase	RR	PleD_VieA	Response regulator, PleD_VieA family contains 2 PAS,1 GGDEF,1 EAL,1 Response_reg	0
SCD_n02293	2338166	2339569	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 GAF, 1 HisKA_MA, 1 HATPase_c, 	0
SCD_n02294	2339574	2340920	+	response regulator receiver modulated metal                     dependent phosphohydrolase	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
SCD_n02295	2340922	2341527	+	response regulator receiver	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
SCD_n02297	2342161	2343381	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	1
SCD_n02298	2343427	2345670	+	type II secretion system protein E	RR	PilB	Response regulator, PilB family contains 1 Response_reg,1 GSPII_E	0
SCD_n02306	2354896	2355579	+	response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n02307	2355563	2356954	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	3
SCD_n02321	2368656	2370212	+	response regulator receiver domain-containing                     protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
SCD_n02322	2370209	2370940	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
SCD_n02584	2639235	2640386	-	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SCD_n02585	2640502	2641173	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SCD_n02747	2792321	2793691	-	Fis family two component sigma-54 specific                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
SCD_n02748	2793694	2795463	-	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
SCD_n02800	2844641	2845408	-	LytTR family two component transcriptional                     regulator	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
SCD_n02801	2845401	2846396	-	two-component system sensor ATPase	PP	HisKa	Phosphotransfer protein contains 1 His_kinase	0
SCD_n02922	2986017	2991731	-	response regulator receiver CheW-like protein	HK	CheA	Histidine kinase, CheA contains 3 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg	0
SCD_n02925	2994535	2994900	-	pilus protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
SCD_n02926	2994912	2995316	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
SCD_n02989	3071068	3072423	-	two component sigma-54 specific Fis family                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
SCD_n02990	3072440	3074515	-	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	9
SCD_n03014	3110022	3110663	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
