#Sphaerochaeta pleomorpha str. Grapes (60 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
SpiGrapes_0047	46963	47700	+	response regulator of the LytR/AlgR family	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
SpiGrapes_0071	73954	75024	+	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
SpiGrapes_0072	75034	77943	+	signal transduction histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	3
SpiGrapes_0103	106722	108446	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c	1
SpiGrapes_0104	108448	109125	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_0190	203205	203927	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_0191	203924	205312	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SpiGrapes_0237	255635	256294	-	response regulator containing a CheY-like                     receiver domain and an HTH DNA-binding domain	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
SpiGrapes_0238	256278	258632	-	transcriptional regulator	HK	Classic	Histidine kinase, Classic contains 1 Peripla_BP_1,1 HisKA_3,1 HATPase_c	0
SpiGrapes_0376	401218	403242	-	diguanylate cyclase domain-containing protein	RR	PleD	Response regulator, PleD family contains 1 GGDEF,1 Response_reg	0
SpiGrapes_0379	407455	409032	+	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	YesN	Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC	0
SpiGrapes_0380	409025	410047	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	2
SpiGrapes_0556	604063	605424	-	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
SpiGrapes_0557	605396	606628	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
SpiGrapes_0783	847869	848807	+	putative transcriptional regulator, contains                     C-terminal CBS domains	HK	Classic	Histidine kinase, Classic contains 2 CBS, 1 HisKA_MA, 1 HATPase_c, 	0
SpiGrapes_1022	1121833	1123344	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
SpiGrapes_1023	1123341	1124066	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_1024	1124077	1124808	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_1043	1144955	1146709	+	HAMP domain-containing protein,histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 His_kinase,1 HATPase_c	3
SpiGrapes_1044	1146725	1147495	+	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	YesN	Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC	0
SpiGrapes_1201	1315523	1316878	-	response regulator with CheY-like receiver,                     AAA-type ATPase, and DNA-binding domains	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
SpiGrapes_1202	1316875	1318194	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
SpiGrapes_1433	1549738	1551240	+	putative regulator of cell autolysis	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 His_kinase,1 HATPase_c	1
SpiGrapes_1434	1551240	1552724	+	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	YesN	Response regulator, YesN family contains 1 Response_reg,1 HTH_AraC	0
SpiGrapes_1619	1768848	1770578	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 His_kinase,1 HATPase_c	3
SpiGrapes_1620	1770571	1772160	+	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	YesN	Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC	0
SpiGrapes_1814	1982961	1983530	+	response regulator with putative antiterminator                     output domain	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
SpiGrapes_1825	1995073	1996857	+	HAMP domain-containing protein,histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 Cache_1,1 HAMP,1 His_kinase,1 HATPase_c	4
SpiGrapes_1826	1996868	1997680	+	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	YesN	Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC	0
SpiGrapes_1846	2019572	2022160	+	diguanylate cyclase domain-containing protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 GGDEF,1 EAL,1 PAS_3	0
SpiGrapes_1850	2024889	2026541	+	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	YesN	Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC	0
SpiGrapes_1851	2026546	2028312	+	HAMP domain-containing protein,histidine                     kinase,cache domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 Cache_1,1 HAMP,1 His_kinase,1 HATPase_c	1
SpiGrapes_1862	2044544	2047537	+	phosphoenolpyruvate synthase	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
SpiGrapes_1981	2178818	2182069	+	transcriptional regulator	HK	Classic	Probable incomplete histidine kinase contains 1 Peripla_BP_1,1 HisKA,2 HTH_AraC	1
SpiGrapes_2248	2456039	2458597	+	PAS domain S-box	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 GAF, 1 SpoIIE, 1 HisKA_MA, 1 HATPase_c, 	2
SpiGrapes_2367	2596257	2597282	-	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
SpiGrapes_2370	2598667	2600997	+	PAS domain S-box	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
SpiGrapes_2403	2632964	2634004	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
SpiGrapes_2404	2634001	2634699	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_2418	2650299	2652038	+	putative regulator of cell autolysis	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 His_kinase,1 HATPase_c	3
SpiGrapes_2419	2652013	2653521	+	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	YesN	Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC	0
SpiGrapes_2555	2797616	2798305	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_2556	2798390	2800627	+	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	3
SpiGrapes_2634	2891451	2892881	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SpiGrapes_2635	2892871	2893569	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_2778	3038089	3039621	+	HAMP domain-containing protein,histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 His_kinase,1 HATPase_c	2
SpiGrapes_2779	3039599	3040369	+	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	YesN	Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC	0
SpiGrapes_2790	3050430	3052019	-	response regulator containing CheY-like receiver                     domain and AraC-type DNA-binding domain	RR	YesN	Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC	0
SpiGrapes_2791	3052012	3053484	-	putative signal transduction protein with a                     C-terminal ATPase domain	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 His_kinase,1 HATPase_c	1
SpiGrapes_2809	3073198	3073917	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_2810	3073914	3075293	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	2
SpiGrapes_2885	3144486	3145793	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
SpiGrapes_2886	3145768	3146490	-	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_2894	3152305	3155166	+	histidine kinase,Response regulator receiver                     domain protein,histidine kinase,Hpt domain-containing                     protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	1
SpiGrapes_2895	3155194	3156312	+	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
SpiGrapes_2896	3156309	3157418	+	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
SpiGrapes_2898	3158211	3159308	+	CheY-like receiver domain-containing protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
SpiGrapes_2899	3159298	3160392	+	response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
SpiGrapes_2920	3181805	3182497	+	response regulator with CheY-like receiver                     domain and winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SpiGrapes_2921	3182494	3183792	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
