#Simiduia agarivorans SA1 = DSM 21679 (110 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
M5M_00055	14219	15538	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
M5M_00385	85265	86572	+	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
M5M_00395	86948	87310	+	chemotaxis response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
M5M_00400	87314	89539	+	CheA signal transduction histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
M5M_00430	94046	95116	+	Chemotaxis response regulator protein-glutamate                     methylesterase CheB	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
M5M_00460	101497	101922	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
M5M_00755	161935	163323	-	abfS arabinofuranosidase two component system                     sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
M5M_00760	163320	164009	-	abfR arabinofuranosidase two component system                     response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
M5M_00920	195787	197235	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	2
M5M_01105	241753	242691	+	chemotaxis signal transduction protein	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
M5M_01470	316528	317103	+	GacA	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
M5M_01600	349691	350332	+	response regulator receiver protein	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
M5M_01605	350340	353852	-	sensory box histidine kinase/response regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	13
M5M_02195	493089	494087	+	chemotaxis protein CheV	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
M5M_02310	519974	521185	+	two-component sensor	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
M5M_02315	521178	522593	+	transcriptional activator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
M5M_02360	529362	531077	+	response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 SpoIIE	2
M5M_02365	531096	531428	+	hypothetical protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
M5M_02440	545207	545590	+	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
M5M_02450	546466	548715	+	putative CheA signal transduction histidine                     kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	2
M5M_02455	548891	549796	+	chemotaxis-specific protein-glutamate                     methyltransferase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
M5M_02885	636700	637377	+	response regulator receiver domain-containing                     protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
M5M_02890	637382	638797	+	putative 2-component sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
M5M_03045	676836	679037	-	response regulator receiver domain-containing                     protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	5
M5M_03310	731132	733936	+	GacS	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
M5M_03865	845331	846701	-	ribose 5-phosphate isomerase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
M5M_03870	846701	847372	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
M5M_03965	863998	867393	+	two-component system sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	12
M5M_03970	867476	868147	-	Response regulator, LuxR family protein	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
M5M_03980	869009	869704	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
M5M_03985	869706	871358	-	response regulator receiver domain-containing                     protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
M5M_04775	1059184	1061208	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	0
M5M_05365	1188335	1191268	-	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_3,2 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	1
M5M_05545	1226037	1226366	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
M5M_05780	1274149	1274823	-	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
M5M_05785	1274816	1276042	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
M5M_06030	1344307	1346232	+	Signal transduction histidine kinase-like                     protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	3
M5M_06035	1346365	1347012	-	XRE family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
M5M_06205	1379056	1382070	+	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	3
M5M_06400	1424186	1425658	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
M5M_06405	1425655	1426362	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
M5M_06730	1513392	1514483	+	histidine kinase family protein	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	5
M5M_06735	1514480	1515232	+	response regulator receiver domain-containing                     protein	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
M5M_07175	1611460	1615731	+	PAS domain-containing protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_4,1 PAS_3,1 PAS,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	1
M5M_07280	1630333	1633302	+	galS His Kinase A (phosphoacceptor) domain                     protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	14
M5M_07285	1633367	1634752	+	two-component response regulator CbrB	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 AAA_5	0
M5M_07805	1753701	1754606	+	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
M5M_08280	1840444	1842600	+	putative hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	1
M5M_08570	1899411	1900691	+	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	7
M5M_08575	1900697	1901212	+	two component Fis family transcriptional                     regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
M5M_08615	1914751	1916358	+	sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	5
M5M_08620	1916358	1917701	+	Type 4 fimbriae expression regulatory protein                     pilR	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
M5M_08760	1943093	1945168	+	two-component signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	10
M5M_08765	1945165	1946526	+	putative PEP-CTERM system response regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
M5M_09295	2045907	2048627	+	sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 MASE1,1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg	7
M5M_09820	2172818	2173213	-	chemotaxis protein CheA	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
M5M_09825	2173210	2174043	-	signal transduction protein	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
M5M_09830	2174060	2176111	-	sensory box histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE,1 HisKA,1 HATPase_c	1
M5M_09880	2182960	2184966	+	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_3,1 GAF,1 HisKA,1 HATPase_c,1 Response_reg	0
M5M_09920	2190248	2190589	-	multi-sensor hybrid histidine kinase	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
M5M_09925	2190739	2191956	+	response regulator receiver modulated                     diguanylate phosphodiesterase	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
M5M_10185	2249102	2250655	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	0
M5M_10385	2303138	2303827	-	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
M5M_10390	2303817	2305232	-	phosphotransferase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
M5M_10755	2399582	2401897	-	sensor histidine kinase/response regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	7
M5M_11235	2503015	2509458	-	type IV pili sensor histidine kinase/response                     regulator PilL	HK	CheA	Histidine kinase, CheA contains 4 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg	0
M5M_11255	2513197	2513559	-	twitching motility protein PilH	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
M5M_11260	2513632	2514027	-	protein PilG	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
M5M_11350	2529173	2531569	+	MmoS protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,2 Response_reg	1
M5M_11795	2617094	2617828	-	alginate biosynthesis regulatory protein AlgR	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
M5M_11800	2617828	2618850	-	AlgZ protein	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	4
M5M_11810	2620516	2623992	+	sensor histidine kinase for anaerobic                     respiratory control, ArcS	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,2 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg	0
M5M_11815	2624121	2626739	+	response regulator receiver domain-containing                     protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg	0
M5M_11955	2653568	2654404	-	putative transcriptional regulator CadC	RR	OmpR	Response regulator, OmpR family contains 1 Trans_reg_C,1 Response_reg	0
M5M_12665	2785344	2786189	+	response regulator receiver domain-containing                     protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
M5M_12685	2787963	2789264	-	phosphate regulon sensor protein PhoR	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
M5M_12690	2789312	2790016	-	phosphate regulon transcriptional regulatory                     protein PhoB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
M5M_13035	2848165	2848971	-	response regulator	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
M5M_13040	2848968	2850089	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	5
M5M_13140	2866551	2868290	+	EAL domain-containing protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 GGDEF,1 EAL	0
M5M_13200	2881341	2882630	-	response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
M5M_13210	2883227	2884192	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
M5M_13270	2894815	2896281	-	response regulator receiver domain-containing                     protein	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
M5M_14365	3120055	3121485	-	nitrogen regulation protein NR(I)	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
M5M_14370	3121472	3122548	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
M5M_14565	3162761	3163471	-	LytT family response regulator	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
M5M_14570	3163468	3164568	-	putative signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	5
M5M_14605	3171236	3172303	+	response regulator receiver modulated metal                     dependent phosphohydrolase	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
M5M_15220	3306995	3308377	-	rubredoxin--NAD(+) reductase	RR	TrxB	Response regulator, TrxB family contains 1 Response_reg,1 Pyr_redox	0
M5M_15555	3377356	3377967	-	response regulator receiver protein	RR	MerR	Response regulator, MerR family contains 1 MerR,1 Response_reg	0
M5M_15560	3378505	3379809	+	response regulator receiver sensor signal                     transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg, 1 HisKA_MA, 1 HATPase_c, 	0
M5M_15590	3383151	3385559	-	PAS/PAC sensor hybrid histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS_3,1 HisKA,1 HATPase_c	1
M5M_15695	3409712	3411370	-	response regulator/GGDEF domain-containing                     protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 GGDEF,1 EAL	0
M5M_15700	3411375	3411800	-	response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
M5M_15710	3411790	3414267	-	sensory transduction protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
M5M_15745	3419674	3420318	-	transcriptional regulator NarL	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
M5M_15770	3426309	3427502	+	histidine kinase response regulator hybrid                     protein	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	0
M5M_15775	3427480	3429309	-	signal transduction histidine kinase,                     nitrate/nitrite-specific	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	1
M5M_15825	3443289	3445037	-	integral membrane sensor hybrid histidine                     kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	5
M5M_15930	3464068	3465774	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
M5M_16020	3485897	3489682	+	putative hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 CHASE,1 GAF,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
M5M_17460	3852405	3853673	+	response regulator protein	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
M5M_18150	3992593	3994173	-	signal transduction histidine kinase regulating                     citrate/malate metabolism	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	1
M5M_18155	3994170	3994961	-	response regulator receiver protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
M5M_18510	4069794	4070993	+	response regulator	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE	0
M5M_18880	4152844	4156119	+	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	3
M5M_19000	4180846	4181862	+	chemotaxis protein CheC	RR	CheC	Response regulator, CheC family contains 1 Response_reg,1 CheC	0
M5M_19020	4185713	4186405	+	regulatory protein BvrR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
M5M_19025	4186402	4188393	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
M5M_19065	4197320	4198435	-	metal dependent phosphohydrolase	PP	HPt	Phosphotransfer protein contains 1 Hpt,1 HD	0
