#Salmonella enterica subsp. enterica serovar Paratyphi C strain (65 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
SPC_0056	55360	56046	-	transcriptional regulator CitB	RR	CitT	Response regulator, CitT family contains 1 Response_reg,1 CitT	0
SPC_0057	56048	57706	-	sensor kinase CitA	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	2
SPC_0408	445388	446077	+	transcriptional regulator PhoB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_0409	446147	447442	+	phosphate regulon sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
SPC_0640	679414	681075	+	sensor kinase DpiB	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	4
SPC_0641	681065	681724	+	two-component response regulator DpiA	RR	CitT	Response regulator, CitT family contains 1 Response_reg,1 CitT	0
SPC_0712	757075	757752	-	DNA-binding transcriptional activator KdpE	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_0713	757749	760361	-	sensor protein KdpD	HK	Classic	Histidine kinase, Classic contains 1 MASE1,1 HisKA,1 HATPase_c	4
SPC_1086	1127729	1129165	+	sensor kinase protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SPC_1088	1129928	1131265	+	transcriptional regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 AAA_5	0
SPC_1180	1247494	1249194	-	nitrate/nitrite sensor protein NarQ	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	2
SPC_1261	1330066	1332072	+	phosphoglycerate transport system sensor protein                     PgtB	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
SPC_1262	1332062	1333309	+	phosphoglycerate transport system                     transcriptional regulator PgtA	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
SPC_1397	1458701	1459702	-	chemotaxis signal transduction protein	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
SPC_1441	1506740	1509586	+	hybrid sensory kinase in two-component                     regulatory system with RcsB and YojN	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	3
SPC_1442	1509688	1510338	-	transcriptional regulator RcsB	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
SPC_1443	1510355	1513024	-	phosphotransfer intermediate protein in                     two-component regulatory system with RcsBC	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c, 1 Hpt, 	1
SPC_1465	1532981	1533697	-	transcriptional regulator NarP	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
SPC_1543	1614537	1616237	+	two-component system sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 His_kinase,1 HATPase_c	7
SPC_1544	1616234	1616953	+	two-component response-regulatory protein YehT	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
SPC_1587	1655483	1656205	-	DNA-binding transcriptional regulator BaeR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_1588	1656202	1657605	-	signal transduction histidine-protein kinase                     BaeS	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
SPC_1767	1831353	1831973	+	response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
SPC_1791	1850918	1852927	+	chemotaxis protein CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
SPC_1795	1856366	1857415	+	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
SPC_1796	1857433	1857822	+	chemotaxis regulatory protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
SPC_1964	2012288	2012938	-	transcriptional regulator NarL	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
SPC_1965	2012931	2014772	-	nitrate/nitrite sensor protein NarX	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	2
SPC_1976	2028737	2029750	+	response regulator of RpoS	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
SPC_2256	2313707	2314438	+	DNA-binding transcriptional regulator RstA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_2260	2318022	2319323	+	sensor protein RstB	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
SPC_2337	2386539	2389301	+	two-component sensor kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	1
SPC_2338	2389332	2389970	+	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
SPC_2342	2392414	2393034	-	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
SPC_2343	2393009	2394787	-	sensory histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
SPC_2513	2554979	2555653	+	DNA-binding transcriptional regulator PhoP	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_2514	2555653	2557116	+	sensor protein PhoQ	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SPC_2654	2690885	2691631	+	transcriptional regulator YedW	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_2655	2691639	2692988	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
SPC_2826	2867574	2868989	-	two-component system sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	2
SPC_2827	2868976	2869650	-	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_3015	3045785	3048541	+	hybrid sensory histidine kinase BarA	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
SPC_3250	3279777	3280436	+	DNA-binding transcriptional regulator QseB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_3251	3280433	3281782	+	sensor protein QseC	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SPC_3398	3423547	3425913	-	aerobic respiration control sensor protein ArcB	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
SPC_3570	3590257	3591600	-	osmolarity sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SPC_3571	3591606	3592325	-	osmolarity response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_3680	3716512	3717114	-	hypothetical protein	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
SPC_3870	3923510	3925012	-	sensory histidine kinase UhpB	HK	Classic	Histidine kinase, Classic contains 1 MASE1,1 HisKA_3,1 HATPase_c	7
SPC_3871	3925012	3925665	-	DNA-binding transcriptional activator UhpA	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
SPC_3910	3960371	3961120	+	DNA-binding transcriptional regulator TorR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_3912	3962261	3964948	+	hybrid sensory histidine kinase TorS	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
SPC_4004	4068462	4069859	+	sensor protein ZraS	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
SPC_4005	4069865	4071190	+	transcriptional regulator ZraR	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
SPC_4108	4186138	4187553	-	nitrogen regulation protein NR(I)	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
SPC_4109	4187556	4188605	-	nitrogen regulation protein NR(II)	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
SPC_4165	4240749	4242122	-	two-component sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SPC_4166	4242119	4242817	-	DNA-binding transcriptional regulator CpxR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_4354	4462547	4463626	-	sensor protein BasS/PmrB	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
SPC_4355	4463627	4464295	-	DNA-binding transcriptional regulator BasR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_4366	4479086	4479805	-	DNA-binding transcriptional activator DcuR	RR	CitT	Response regulator, CitT family contains 1 Response_reg,1 CitT	0
SPC_4367	4479802	4481433	-	sensory histidine kinase DcuS	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	2
SPC_4721	4819881	4820570	+	DNA-binding response regulator CreB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
SPC_4722	4820582	4821994	+	sensory histidine kinase CreC	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
SPC_4731	4831018	4831734	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
