#Rhodococcus pyridinivorans SB3094 (70 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
Y013_00185	37374	38564	+	chemotaxis protein CheY	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE	0
Y013_00190	38635	40200	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HAMP,1 HisKA,1 HATPase_c	2
Y013_00195	40197	40637	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Y013_02460	510349	511947	+	ATP-binding protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Y013_02465	511944	512606	+	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_03785	784395	785051	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_03830	790887	792377	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS,1 HisKA,1 HATPase_c	0
Y013_04300	906680	908107	-	ATPase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Y013_04305	908109	908765	-	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_05115	1076427	1077041	-	transcriptional regulator	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
Y013_06775	1416091	1416768	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_06780	1416780	1417889	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
Y013_07125	1495541	1496818	-	LuxR family transcriptional regulator	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c, 1 HTH_LUXR, 	0
Y013_07490	1575585	1577060	-	ATPase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA_2,1 HATPase_c	0
Y013_07585	1595943	1597664	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Y013_07590	1597661	1598338	-	XRE family transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_07715	1622017	1622697	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_07720	1622747	1623937	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
Y013_07740	1626432	1627739	-	ATPase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Y013_07745	1627750	1628433	-	chemotaxis protein CheY	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_08125	1698626	1699480	-	hypothetical protein	PP	HisKa	Phosphotransfer protein contains 1 H-kinase_dim	0
Y013_08210	1717716	1718402	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_08215	1718399	1719685	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PspC, 1 HisKA_MA, 1 HATPase_c, 	4
Y013_08810	1913767	1914444	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_08815	1914441	1915814	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_3,1 HATPase_c	0
Y013_09440	2030455	2031144	-	XRE family transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_09445	2031206	2032387	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
Y013_09865	2109334	2109972	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_09870	2109969	2111204	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	3
Y013_11005	2379189	2379875	+	chemotaxis protein CheY	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_11010	2379872	2380990	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Y013_11045	2389409	2390839	-	ATP-binding protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Y013_11050	2390836	2391543	-	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_11655	2518673	2519362	-	response regulator receiver	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_11660	2519299	2520501	-	ATP-binding protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	4
Y013_11955	2579187	2580197	+	chitinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	4
Y013_11960	2580194	2580850	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_12825	2765327	2766508	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_3,1 HATPase_c	0
Y013_12830	2766505	2767143	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_13105	2835013	2835732	+	ATPase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	0
Y013_13110	2835720	2836394	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_13985	3002496	3003134	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_13990	3003131	3004366	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	3
Y013_15125	3272351	3273037	+	chemotaxis protein CheY	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_15130	3273034	3274152	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Y013_15165	3282571	3284001	-	ATP-binding protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Y013_15170	3283998	3284705	-	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_15685	3384914	3386554	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HAMP,1 HisKA,1 HATPase_c	2
Y013_15690	3386566	3387015	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Y013_15770	3400624	3401934	+	ATPase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	1
Y013_16520	3544254	3547784	+	ATPase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
Y013_17660	3784100	3786592	+	chemotaxis protein CheY	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 ANTAR	0
Y013_18160	3887075	3889006	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	10
Y013_18165	3889003	3889653	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_19170	4091450	4092076	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_19175	4092073	4093296	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
Y013_19300	4119061	4121022	+	ATPase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	2
Y013_19815	4231635	4232327	-	chemotaxis protein CheY	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 HTH_11	0
Y013_19820	4232324	4233871	-	ATP-binding protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	3
Y013_20425	4353819	4355489	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	1
Y013_20430	4355471	4356133	+	response regulator receiver	RR	IclR	Response regulator, IclR family contains 1 Response_reg,1 HTH_IclR	0
Y013_20815	4429268	4430482	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	1
Y013_20820	4430514	4431296	+	LytR family transcriptional regulator	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
Y013_20915	4447661	4448338	+	response regulator receiver	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Y013_20920	4448322	4449545	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	6
Y013_20935	4450982	4452196	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	6
Y013_21035	4468894	4469541	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Y013_21040	4469567	4471225	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 2 GAF,1 HisKA_3,1 HATPase_c	0
Y013_21245	4510257	4510946	+	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Y013_21250	4510955	4512358	+	ATP-binding protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
