#Rhodospirillum photometricum DSM 122 (113 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
RSPPHO_00004	62478	62888	+	CheY-like receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00039	106336	109386	+	Sensor protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 Cache_1,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
RSPPHO_00041	110936	111352	+	CheY-like receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00069	143471	144493	-	Response regulator	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
RSPPHO_00072	149335	150750	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	0
RSPPHO_00094	180192	181448	-	Sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
RSPPHO_00110	194266	195186	+	Two component transcriptional regulator, winged                     helix family / cell cycle transcriptional regulator CtrA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_00112	196092	197249	-	Chemotaxis response regulator protein-glutamate                     methylesterase 1	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
RSPPHO_00113	197273	197644	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00114	197815	200637	-	CheA Signal Transduction Histidine Kinases                     (STHK)	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,2 CheW,1 Response_reg	0
RSPPHO_00137	222303	223010	-	Two component transcriptional regulator, winged                     helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_00208	292144	292533	+	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00280	371567	372367	-	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RSPPHO_00297	396321	397847	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	2
RSPPHO_00334	437373	438122	+	Response regulator consisting of a CheY-like                     receiver domain and a winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_00335	438965	439579	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
RSPPHO_00342	448820	449581	-	Two-component transcriptional regulator, winged                     helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_00351	461137	461877	+	Two component transcriptional regulator, winged                     helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_00352	461911	463641	+	Sensor protein	HK	Classic	Probable incomplete histidine kinase contains 1 HAMP,1 HisKA	2
RSPPHO_00435	557796	560867	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 2 PAS_3,1 PAS,2 PAS_4,1 HisKA,1 HATPase_c	0
RSPPHO_00447	574697	576631	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 2 PAS,1 HisKA,1 HATPase_c	0
RSPPHO_00455	584713	586020	-	Chemotaxis response regulator protein-glutamate                     methylesterase 2	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
RSPPHO_00461	592522	594618	-	CheA Signal Transduction Histidine Kinases                     (STHK)	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
RSPPHO_00462	594631	595020	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00513	666540	669302	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
RSPPHO_00514	669280	669972	+	KDP operon transcriptional regulatory protein                     KdpE	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_00549	707014	708435	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
RSPPHO_00554	711048	711449	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00556	712162	712578	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00559	713566	716145	-	CheA Signal Transduction Histidine Kinases                     (STHK)	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
RSPPHO_00560	716142	716573	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00563	718058	719158	-	Chemotaxis response regulator protein-glutamate                     methylesterase 4	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
RSPPHO_00567	725182	726216	+	Response regulator receiver domain protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
RSPPHO_00642	813834	814304	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00698	881512	882927	+	Two component, sigma54 specific, transcriptional                     regulator, Fis family	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
RSPPHO_00735	914071	915201	-	Response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
RSPPHO_00761	947164	949572	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c	1
RSPPHO_00819	1029890	1032511	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 PAS_3,1 HisKA,1 HATPase_c	1
RSPPHO_00822	1035143	1036438	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
RSPPHO_00836	1053753	1054835	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	2
RSPPHO_00843	1060678	1062582	+	Sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	0
RSPPHO_00850	1071816	1074008	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 SBP_bac_3,1 HisKA,1 HATPase_c	2
RSPPHO_00885	1110108	1112903	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	3
RSPPHO_00961	1195662	1197839	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
RSPPHO_00983	1223900	1224955	+	Chemotaxis response regulator protein-glutamate                     methylesterase 5	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
RSPPHO_00985	1226425	1228587	+	Gliding motility regulatory protein	HK	Classic	Histidine kinase, Classic contains 1 Hpt, 1 H-kinase_dim, 1 HisKA_MA, 1 HATPase_c, 	0
RSPPHO_00986	1228608	1228970	+	hypothetical protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_00987	1228874	1230844	+	response regulator containing a CheY-like                     receiver domain and a GGDEF domain	RR	PleD	Response regulator, PleD family contains 1 Hpt,2 Response_reg,1 GGDEF	0
RSPPHO_00996	1236683	1237444	-	Response regulator receiver domain-containing                     protein (CheY)	RR	unclassified	Response regulator, unclassified contains 1 REC	0
RSPPHO_01054	1303705	1304367	+	DNA-binding response regulator	RR	unclassified	Response regulator, unclassified contains 1 REC	0
RSPPHO_01142	1420181	1421494	-	Sensor protein	RR	unclassified	Response regulator, unclassified contains 1 REC,1 Response_reg,1 Hpt	0
RSPPHO_01143	1421364	1422872	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
RSPPHO_01144	1422869	1423672	-	CheY-like receiver	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
RSPPHO_01204	1487902	1489875	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 PAS,1 HisKA,1 HATPase_c	1
RSPPHO_01218	1503169	1504557	-	Two component, sigma54 specific, transcriptional                     regulator, Fis family	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
RSPPHO_01219	1504547	1506835	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	4
RSPPHO_01264	1538723	1540405	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 2 PAS_3,1 HisKA,1 HATPase_c	0
RSPPHO_01347	1638856	1640478	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c	1
RSPPHO_01379	1672425	1674914	-	Sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
RSPPHO_01410	1701420	1703498	+	Sensor protein	HK	Classic	Probable incomplete histidine kinase contains 2 PAS,1 HisKA	0
RSPPHO_01451	1747303	1747686	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_01452	1747683	1750463	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 PAS_4,1 HisKA,1 HATPase_c	3
RSPPHO_01535	1845765	1847561	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 PAS_3,1 HisKA,1 HATPase_c	0
RSPPHO_01546	1858395	1862042	+	Sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 3 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	0
RSPPHO_01558	1879804	1880751	+	Response regulator consisting of a CheY-like                     receiver domain and a winged-helix DNA-binding domain	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_01624	1945503	1946990	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
RSPPHO_01650	1982775	1983995	+	Response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
RSPPHO_01699	2044246	2045001	+	Two-component transcriptional regulator, winged                     helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_01700	2045068	2047731	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c	2
RSPPHO_01734	2085325	2086479	-	Response regulator containing a CheY-like                     receiver domain and an HD-GYP domain	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
RSPPHO_01735	2086479	2087705	-	Response regulator containing a CheY-like                     receiver domain and an HTH DNA-binding domain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HDOD	0
RSPPHO_01736	2087696	2090938	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_3, 2 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	0
RSPPHO_01802	2162669	2165179	-	Sensor protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	0
RSPPHO_01803	2165141	2168290	+	Sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 Cache_1,1 HisKA,1 HATPase_c,1 Response_reg	2
RSPPHO_01827	2190351	2192687	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 PAS,1 PAS_3,1 HisKA,1 HATPase_c	0
RSPPHO_01862	2230792	2231388	-	Signal transduction histidine kinase-like                     protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
RSPPHO_01878	2249644	2251116	+	Two component, sigma54 specific, transcriptional                     regulator, Fis family	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
RSPPHO_01922	2295058	2295747	-	Two component transcriptional regulator, winged                     helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_01951	2321621	2322403	-	Sensor protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 Hpt	0
RSPPHO_01958	2327511	2328623	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	2
RSPPHO_01959	2328702	2330156	+	NtrC protein	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
RSPPHO_02075	2470879	2472555	-	Response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Hpt,1 Response_reg,1 GGDEF	0
RSPPHO_02076	2472537	2472782	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_02082	2479537	2480196	+	Two component transcriptional regulator, winged                     helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_02083	2480193	2481521	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
RSPPHO_02089	2486810	2487526	+	Two component transcriptional regulator, winged                     helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_02090	2487533	2488954	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
RSPPHO_02131	2546238	2546936	+	Two-component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RSPPHO_02132	2546992	2549694	-	Sensor protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	1
RSPPHO_02266	2700266	2703370	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	2
RSPPHO_02267	2703241	2703987	+	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
RSPPHO_02269	2706250	2707848	-	Two component, sigma54 specific, transcriptional                     regulator, Fis family	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
RSPPHO_02319	2762407	2764233	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 Cache_1,1 HisKA,1 HATPase_c	3
RSPPHO_02412	2880425	2880844	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_02413	2880988	2882271	-	Guanylate cyclase (GGDEF domain) with PAS/PAC                     sensor and Response Regulator Receiver modulation	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 PAS,1 GGDEF	0
RSPPHO_02442	2931187	2933211	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
RSPPHO_02506	3011394	3013610	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c	1
RSPPHO_02538	3043590	3044258	-	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RSPPHO_02621	3132307	3133797	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	7
RSPPHO_02622	3133794	3134486	+	Sensor protein	RR	Xre	Response regulator, Xre family contains 1 HTH_3,1 Response_reg	0
RSPPHO_02637	3159900	3162077	-	Sensor protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	0
RSPPHO_02732	3268423	3270288	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 2 PAS_4,1 PAS,1 HisKA,1 HATPase_c	0
RSPPHO_02737	3277584	3278477	-	Response regulator	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
RSPPHO_02738	3278474	3282640	-	Sensor protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 CHASE,2 PAS,1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	1
RSPPHO_02776	3326295	3326741	+	CheY-like receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_02778	3327528	3329801	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,3 PAS_4,1 HisKA,1 HATPase_c	0
RSPPHO_02822	3381244	3382323	-	Response regulator receiver:Metal-dependent                     phosphohydrolase, HD subdomain	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
RSPPHO_02875	3448385	3451444	+	Sensor protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 2 PAS,1 PAS_4,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	0
RSPPHO_02884	3465418	3466140	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
RSPPHO_03105	3725588	3726373	-	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
RSPPHO_03106	3727436	3727873	-	Response regulator receiver domain-containing                     protein (CheY)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_03166	3804728	3805318	-	Chemotaxis protein cheYIII, putative	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RSPPHO_03220	3867145	3869448	-	Sensor protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 2 Response_reg, 1 HTH_LUXR, 	0
