#Rhodopseudomonas palustris TIE-1 (127 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
Rpal_0007	8982	10430	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_4,1 PAS,1 HWE_HK	0
Rpal_0082	89441	91954	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS,1 HisKA,1 HATPase_c	1
Rpal_0125	136785	139064	+	GAF sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
Rpal_0140	155870	156961	-	response regulator receiver modulated CheB                     methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Rpal_0145	161272	163338	-	CheA signal transduction histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Rpal_0146	163335	163700	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_0148	164312	165469	+	response regulator receiver modulated metal                     dependent phosphohydrolase	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Rpal_0286	305420	306106	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_0319	338482	340392	-	integral membrane sensor hybrid histidine                     kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,2 Response_reg	2
Rpal_0360	379838	381583	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Rpal_0361	381746	382447	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_0495	536095	539325	+	multi-sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	1
Rpal_0574	622923	623477	-	Fis family transcriptional regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
Rpal_0575	623569	624891	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Rpal_0586	635045	637786	+	multi-sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	3
Rpal_0639	691459	692937	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	3
Rpal_0825	870381	871748	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS,1 PAS_3,1 HWE_HK	0
Rpal_0920	975737	976414	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpal_0921	976576	980085	-	integral membrane sensor hybrid histidine                     kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	13
Rpal_0976	1042357	1042716	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_1171	1239291	1240739	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
Rpal_1172	1240729	1242081	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
Rpal_1173	1242187	1244574	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_3,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
Rpal_1182	1253332	1255872	-	response regulator receiver modulated GAF sensor                     protein	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_2,1 GAF,1 PHY,1 HWE_HK,1 Response_reg	0
Rpal_1366	1438998	1439393	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_1441	1521062	1521988	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpal_1442	1521978	1525346	-	integral membrane sensor hybrid histidine                     kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	15
Rpal_1461	1544536	1545915	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
Rpal_1517	1598526	1600424	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	4
Rpal_1518	1600480	1600911	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_1519	1600908	1601594	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Rpal_1523	1604215	1605057	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
Rpal_1538	1624174	1624872	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_2,1 HATPase_c	0
Rpal_1544	1630069	1635201	+	ATP-binding protein	HK	Classic	Histidine kinase, Classic contains 1 S_TKc,1 AAA_5,1 GAF,1 HisKA,1 HATPase_c	0
Rpal_1668	1787079	1787474	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_1676	1795639	1796325	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpal_1677	1796330	1798642	-	GAF sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA_3,1 HATPase_c	2
Rpal_1744	1870751	1871440	+	response regulator receiver protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 Hpt	0
Rpal_1745	1871462	1872298	+	response regulator receiver protein	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
Rpal_1746	1872314	1875025	+	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 2 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
Rpal_1817	1950824	1953637	+	CheA signal transduction histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,2 CheW,1 Response_reg	2
Rpal_1819	1954202	1954567	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_1820	1954709	1955821	+	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Rpal_1822	1956997	1957698	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_1870	2009116	2009619	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_1872	2012593	2015406	+	CheA signal transduction histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,2 CheW,1 Response_reg	2
Rpal_1876	2017387	2018637	+	response regulator receiver modulated                     diguanylate phosphodiesterase	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
Rpal_1877	2018668	2021259	-	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
Rpal_1878	2021682	2022308	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpal_1968	2124979	2127780	-	signal transduction histidine kinase, nitrogen                     specific, NtrB	HK	Hybrid	Histidine kinase, Hybrid contains 1 Cache_1,1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	1
Rpal_2063	2234522	2236354	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c	5
Rpal_2126	2294702	2295376	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_2127	2295392	2296783	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
Rpal_2141	2311711	2312436	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_2143	2314169	2315617	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Rpal_2148	2324204	2326513	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c	3
Rpal_2185	2366308	2367903	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Rpal_2363	2549453	2549821	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 REC	0
Rpal_2364	2549818	2551719	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 GAF,1 PAS,1 PAS_3,1 HWE_HK	1
Rpal_2366	2552147	2552824	-	signal transduction histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HWE_HK	0
Rpal_2398	2583206	2588344	-	ATP-binding protein	HK	Classic	Histidine kinase, Classic contains 1 Pkinase,1 GAF,1 HisKA,1 HATPase_c	1
Rpal_2399	2588331	2588717	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_2400	2588806	2589438	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Rpal_2427	2614905	2617028	-	integral membrane sensor hybrid histidine                     kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	3
Rpal_2535	2738804	2740222	-	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HisKA,1 HATPase_c	1
Rpal_2611	2823540	2824643	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Rpal_2612	2824640	2825326	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_2710	2942093	2943184	-	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA_2,1 HATPase_c	0
Rpal_2711	2943181	2943624	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_2712	2943621	2945153	-	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HisKA,1 HATPase_c	2
Rpal_2862	3121485	3122657	+	signal transduction histidine kinase, nitrogen                     specific, NtrB	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
Rpal_2863	3122667	3124109	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Rpal_2864	3124269	3126560	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	4
Rpal_2865	3126577	3127944	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Rpal_3126	3372094	3373152	+	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_3,1 HWE_HK	0
Rpal_3180	3427127	3427501	+	response regulator receiver protein	RR	unclassified	Response regulator, unclassified contains 1 REC	0
Rpal_3409	3647806	3648489	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_3410	3648495	3651218	-	osmosensitive K+ channel signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
Rpal_3423	3662806	3663513	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpal_3424	3663737	3666013	+	GAF sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
Rpal_3425	3666017	3668344	+	GAF sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
Rpal_3426	3668345	3668809	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_3427	3668806	3669942	+	response regulator receiver sensor signal                     transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA_3,1 HATPase_c	0
Rpal_3516	3764416	3765522	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_2,1 HATPase_c	0
Rpal_3541	3791121	3792494	-	response regulator PleD	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
Rpal_3542	3792505	3792870	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_3600	3852237	3854939	-	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 PAS_3, 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	1
Rpal_3632	3889656	3891716	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	0
Rpal_3739	4002282	4005419	+	CheR-type MCP methyltransferase	HK	Classic	Probable incomplete histidine kinase contains 1 CheB_methylest,1 MeTrc,1 PAS_4,1 HWE_HK	0
Rpal_3819	4102591	4103547	-	signal transduction histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HWE_HK	0
Rpal_3839	4126410	4127042	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpal_3840	4127039	4129318	-	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,2 PAS_3,1 HisKA,1 HATPase_c	4
Rpal_3861	4148752	4149297	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_3862	4149315	4149905	+	CheA signal transduction histidine kinase	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
Rpal_4089	4387327	4388049	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_4090	4388046	4389380	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Rpal_4227	4537494	4538078	+	response regulator receiver and ANTAR                     domain-containing protein	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
Rpal_4405	4729917	4732559	-	multi-sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 3 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	2
Rpal_4456	4789740	4793987	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 3 PAS_4,2 HisKA,2 HATPase_c,2 Response_reg	0
Rpal_4478	4815300	4815659	-	Hpt protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
Rpal_4536	4885459	4886751	+	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 GAF,1 HWE_HK	0
Rpal_4537	4886748	4887125	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_4618	4976775	4980350	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
Rpal_4667	5026595	5028082	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Rpal_4704	5062605	5063411	-	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Rpal_4707	5064529	5066199	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 CHASE,1 HWE_HK	3
Rpal_4726	5087572	5089098	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 PAS,1 HisKA,1 HATPase_c	0
Rpal_4727	5089091	5089702	+	response regulator FixJ	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Rpal_4728	5089788	5090180	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_4802	5169570	5170022	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_4851	5212726	5214114	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Rpal_4852	5214393	5215115	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_4904	5272912	5275533	-	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	7
Rpal_5004	5388681	5389037	-	response regulator receiver protein	RR	unclassified	Response regulator, unclassified contains 1 REC	0
Rpal_5005	5389047	5390051	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS,1 HWE_HK	0
Rpal_5008	5393217	5394431	+	diguanylate phosphodiesterase	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
Rpal_5015	5399019	5399408	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_5220	5631680	5632060	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpal_5236	5646266	5647483	-	histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
Rpal_5261	5674963	5675676	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_5267	5680551	5681897	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	2
Rpal_5275	5689640	5691721	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
Rpal_5276	5691691	5693430	+	response regulator receiver sensor signal                     transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 REC,1 HisKA,1 HATPase_c	0
Rpal_5277	5693427	5694167	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_5303	5724417	5725793	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	1
Rpal_5304	5725790	5726455	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpal_5317	5738035	5739138	-	response regulator receiver modulated metal                     dependent phosphohydrolase	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
