#Rhodopseudomonas palustris HaA2 (120 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
RPB_0035	34035	36800	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	3
RPB_0059	62130	62684	-	two component Fis family transcriptional                     regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
RPB_0060	62851	64173	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
RPB_0181	197228	197860	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
RPB_0182	197949	198338	+	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_0183	198370	203463	+	protein kinase	HK	Classic	Histidine kinase, Classic contains 1 S_TKc,1 GAF,1 HisKA,1 HATPase_c	4
RPB_0211	237384	238070	-	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
RPB_0212	238067	238480	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_0213	238556	240463	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	3
RPB_0214	240693	241976	-	GAF sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	0
RPB_0236	269680	270213	-	two component Fis family transcriptional                     regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
RPB_0237	270206	271519	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
RPB_0381	422148	422834	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_0413	456237	458186	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	2
RPB_0463	510770	511471	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_0464	511624	513423	+	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
RPB_0497	555304	555681	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_0498	555756	557018	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_2,1 HATPase_c	0
RPB_0545	610543	613704	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	4
RPB_0624	703696	706209	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
RPB_0686	769550	771037	+	signal transduction histidine kinase, nitrogen                     specific, NtrB	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	3
RPB_0712	798005	800488	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	0
RPB_0775	868280	869629	+	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	2
RPB_0781	874529	875230	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_0815	931824	933038	+	histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
RPB_0832	947541	947918	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_1181	1354604	1354999	+	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_1250	1428795	1429724	-	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPB_1251	1429714	1433082	-	multi-sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	14
RPB_1276	1462058	1463437	+	two component, sigma54 specific, Fis family                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
RPB_1362	1552839	1553231	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_1363	1553317	1553934	-	response regulator FixJ	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
RPB_1364	1553924	1555456	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 PAS,1 HisKA,1 HATPase_c	0
RPB_1385	1576607	1578271	+	hypothetical protein	HK	Classic	Probable incomplete histidine kinase contains 1 CHASE,1 HWE_HK	3
RPB_1388	1579445	1580251	+	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
RPB_1429	1618040	1619542	-	two component, sigma54 specific, Fis family                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
RPB_1453	1640969	1642444	-	signal transduction histidine kinase, nitrogen                     specific, NtrB	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	3
RPB_1469	1656218	1659667	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
RPB_1762	2016085	2016669	-	response regulator receiver/ANTAR                     domain-containing protein	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
RPB_1960	2227354	2228682	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
RPB_1961	2228709	2229431	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_2148	2437388	2439355	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS,1 HisKA,1 HATPase_c,1 Response_reg	0
RPB_2160	2449803	2450594	-	signal transduction histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HWE_HK	0
RPB_2188	2483144	2483722	-	CheA-like signal transduction histidine kinase	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
RPB_2189	2483727	2484272	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_2356	2707866	2710568	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 PAS_3, 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	2
RPB_2373	2727053	2728423	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
RPB_2374	2728420	2729157	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_2412	2764923	2765288	+	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_2413	2765298	2766671	+	response regulator PleD	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
RPB_2439	2794889	2795989	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA_2,1 HATPase_c	1
RPB_2738	3123168	3123539	+	response regulator receiver domain-containing                     protein	RR	unclassified	Response regulator, unclassified contains 1 REC	0
RPB_2880	3277776	3279143	-	two component, sigma54 specific, Fis family                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
RPB_2881	3279161	3281449	-	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	4
RPB_2882	3281606	3283048	-	nitrogen metabolism transcriptional regulator                     NtrC	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
RPB_2883	3283058	3284227	-	signal transduction histidine kinase, nitrogen                     specific, NtrB	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
RPB_2945	3356905	3357279	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_2946	3357340	3358389	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA_2,1 HATPase_c	0
RPB_3021	3443780	3445312	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HisKA,1 HATPase_c	1
RPB_3022	3445309	3445752	+	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_3023	3445749	3446834	+	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA_2,1 HATPase_c	0
RPB_3064	3496354	3498759	+	putative signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	9
RPB_3065	3498752	3499405	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPB_3152	3605826	3607247	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HisKA,1 HATPase_c	2
RPB_3269	3739436	3741550	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	2
RPB_3317	3795808	3796266	+	response regulator receiver domain-containing                     protein	RR	unclassified	Response regulator, unclassified contains 1 REC	0
RPB_3318	3796263	3797402	+	response regulator receiver domain-containing                     protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
RPB_3395	3880910	3882502	+	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
RPB_3436	3935569	3937884	+	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c	3
RPB_3441	3946246	3947715	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
RPB_3442	3947699	3948424	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_3453	3959508	3960902	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
RPB_3454	3960940	3961713	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_3515	4022926	4024809	-	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c	4
RPB_3596	4123837	4126617	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	1
RPB_3745	4284334	4284735	+	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_3771	4305452	4308076	-	multi-sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	2
RPB_3818	4360663	4364943	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 3 PAS_4,2 HisKA,2 HATPase_c,2 Response_reg	0
RPB_3844	4390015	4390359	-	Hpt domain-containing protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
RPB_3850	4402751	4403380	-	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPB_3852	4404716	4407355	+	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
RPB_3853	4407381	4408634	-	response regulator receiver modulated                     diguanylate phosphodiesterase	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
RPB_3857	4410658	4411155	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_3912	4465158	4465859	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_3917	4468960	4470126	-	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
RPB_3918	4470199	4470564	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_3920	4471129	4473933	-	CheA-like signal transduction histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,2 CheW,1 Response_reg	0
RPB_3965	4526821	4530297	-	PAS/PAC sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 CHASE,2 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	4
RPB_3966	4530407	4531243	-	response regulator receiver domain-containing                     protein	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
RPB_3967	4531245	4532006	-	response regulator receiver domain-containing                     protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 Hpt	0
RPB_4034	4603290	4605617	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA_3,1 HATPase_c	0
RPB_4035	4605621	4606307	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPB_4041	4611840	4612214	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_4104	4673771	4675444	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	0
RPB_4105	4675441	4676130	+	response regulator receiver domain-containing                     protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 Hpt	0
RPB_4108	4678020	4678982	-	diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
RPB_4126	4698103	4699140	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_2,1 HATPase_c	4
RPB_4172	4743086	4744474	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
RPB_4173	4744481	4745206	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_4224	4798798	4801431	-	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	6
RPB_4358	4941643	4942983	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
RPB_4359	4942980	4943639	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_4383	4965769	4968285	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
RPB_4385	4969279	4970004	-	two-component response regulator VirG	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_4442	5029307	5029825	+	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_4449	5033940	5034632	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPB_4450	5034829	5037105	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
RPB_4451	5037119	5039446	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
RPB_4452	5039443	5039910	+	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_4453	5039903	5041033	+	response regulator receiver sensor signal                     transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA_3,1 HATPase_c	0
RPB_4515	5102764	5103123	-	response regulator receiver domain-containing                     protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPB_4564	5160324	5163833	+	periplasmic sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	13
RPB_4565	5164042	5164716	-	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPB_4648	5255477	5258179	+	osmosensitive K+ channel signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
RPB_4649	5258176	5258868	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_4665	5276893	5278905	+	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	3
RPB_4666	5278875	5280611	+	response regulator receiver sensor signal                     transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
RPB_4667	5280608	5281351	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPB_4693	5312621	5313979	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	1
RPB_4694	5313976	5314641	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
