#Rhodopseudomonas palustris DX-1 (109 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
Rpdx1_0006	9356	10804	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_4,1 PAS,1 HWE_HK	0
Rpdx1_0081	89319	91832	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS,1 HisKA,1 HATPase_c	1
Rpdx1_0116	127777	130056	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
Rpdx1_0130	145300	148515	-	multi-sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,2 PAS,1 HisKA,1 HATPase_c,1 Response_reg	1
Rpdx1_0268	301727	302428	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_0269	302564	304336	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Rpdx1_0309	343125	345047	+	integral membrane sensor hybrid histidine                     kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	2
Rpdx1_0343	378558	379244	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_0508	543449	544897	+	Fis family two component sigma54 specific                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Rpdx1_0509	544890	546239	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	0
Rpdx1_0511	548186	549277	-	response regulator receiver modulated CheB                     methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Rpdx1_0516	553190	555211	-	CheA signal transduction histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Rpdx1_0517	555208	555573	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_0519	556197	557315	+	response regulator receiver modulated metal                     dependent phosphohydrolase	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Rpdx1_0618	663917	665122	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_2,1 HATPase_c	0
Rpdx1_0619	665196	665573	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_0652	694628	695182	-	response regulator receiver protein	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
Rpdx1_0653	695274	696596	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Rpdx1_0664	706761	709496	+	multi-sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	3
Rpdx1_0715	762514	763992	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	3
Rpdx1_1019	1080530	1081207	+	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpdx1_1020	1081490	1084999	-	ATP-binding protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	13
Rpdx1_1068	1139946	1140305	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_1123	1196234	1198924	+	osmosensitive K channel signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
Rpdx1_1124	1198921	1199625	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_1133	1210946	1213333	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_3,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
Rpdx1_1142	1222276	1224813	-	putative PAS/PAC sensor protein	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_2,1 GAF,1 PHY,1 HWE_HK,1 REC	2
Rpdx1_1345	1425468	1425863	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_1395	1485251	1485640	+	Hpt domain-containing protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
Rpdx1_1466	1564097	1566742	+	multi-sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 3 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	2
Rpdx1_1645	1750374	1750958	-	response regulator receiver and ANTAR                     domain-containing protein	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
Rpdx1_1783	1897051	1898388	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Rpdx1_1784	1898385	1899107	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_2001	2131358	2131948	-	Hpt domain-containing protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
Rpdx1_2002	2131966	2132511	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_2218	2377563	2379623	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	0
Rpdx1_2243	2409719	2412421	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 PAS_3, 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	1
Rpdx1_2293	2464059	2464424	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_2294	2464435	2465808	+	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
Rpdx1_2319	2489736	2490842	+	signal transduction histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HisKA_2	0
Rpdx1_2663	2852293	2852667	-	response regulator receiver	RR	unclassified	Response regulator, unclassified contains 1 REC	0
Rpdx1_2876	3065767	3067134	-	Fis family two component sigma54 specific                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Rpdx1_2877	3067151	3069442	-	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	4
Rpdx1_2878	3069606	3071048	-	Fis family two component sigma54 specific                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Rpdx1_2879	3071058	3072230	-	nitrogen specific signal transduction histidine                     kinase NtrB	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
Rpdx1_3075	3275137	3276669	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HisKA,1 HATPase_c	2
Rpdx1_3076	3276666	3277109	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_3077	3277106	3278194	+	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA_2,1 HATPase_c	0
Rpdx1_3135	3344017	3344703	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_3136	3344700	3345833	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Rpdx1_3222	3438360	3439781	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HisKA,1 HATPase_c	1
Rpdx1_3265	3486020	3486661	-	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpdx1_3390	3626328	3628451	+	integral membrane sensor hybrid histidine                     kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	3
Rpdx1_3534	3778619	3780211	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Rpdx1_3564	3813417	3815726	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c	1
Rpdx1_3569	3824263	3825708	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Rpdx1_3571	3827371	3828096	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_3586	3845421	3846812	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
Rpdx1_3587	3846828	3847502	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_3666	3922601	3924424	-	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	4
Rpdx1_3719	3981912	3983276	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
Rpdx1_3720	3983273	3983947	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_3764	4036670	4039456	+	multi-sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	3
Rpdx1_3840	4122419	4123045	-	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpdx1_3843	4127571	4128074	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_3889	4174547	4175248	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_3891	4176416	4177591	-	response regulator receiver modulated CheB                     methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Rpdx1_3892	4177671	4178036	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_3894	4178601	4181417	-	CheA signal transduction histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,2 CheW,1 Response_reg	2
Rpdx1_3961	4247842	4251315	-	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 CHASE,2 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
Rpdx1_3962	4251321	4252157	-	response regulator receiver protein	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
Rpdx1_3963	4252180	4252869	-	response regulator receiver protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 Hpt	0
Rpdx1_4031	4324619	4326934	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA_3,1 HATPase_c	0
Rpdx1_4032	4326953	4327624	+	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpdx1_4039	4334583	4334945	-	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_4102	4404476	4405171	+	signal transduction histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HWE_HK	0
Rpdx1_4104	4405767	4406135	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 REC	0
Rpdx1_4156	4473195	4474286	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_2,1 HATPase_c	4
Rpdx1_4180	4495223	4496602	-	Fis family two component sigma54 specific                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
Rpdx1_4199	4515813	4519181	+	integral membrane sensor hybrid histidine                     kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	14
Rpdx1_4200	4519171	4520100	+	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Rpdx1_4344	4677671	4681258	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS,1 HisKA,1 HATPase_c	0
Rpdx1_4399	4732721	4734208	+	Fis family two component sigma54 specific                     transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Rpdx1_4443	4775198	4776004	-	response regulator receiver	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Rpdx1_4446	4777153	4778817	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 CHASE,1 HWE_HK	3
Rpdx1_4466	4800215	4801741	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 PAS,1 HisKA,1 HATPase_c	0
Rpdx1_4467	4801734	4802345	+	LuxR family two component transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Rpdx1_4468	4802430	4802822	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_4493	4831126	4833738	+	ATP-binding protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
Rpdx1_4584	4922087	4923475	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Rpdx1_4585	4923637	4924359	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_4635	4977006	4979627	-	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	6
Rpdx1_4716	5073332	5073694	-	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_4717	5073698	5074702	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_4,1 HWE_HK	0
Rpdx1_4720	5077854	5079068	+	response regulator receiver modulated                     diguanylate phosphodiesterase	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
Rpdx1_4727	5083737	5084105	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_4728	5084507	5085994	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	7
Rpdx1_4914	5287282	5287662	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Rpdx1_4931	5302309	5303553	-	histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
Rpdx1_4950	5322755	5324092	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
Rpdx1_4951	5324089	5324748	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_4964	5338269	5338982	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_4970	5343858	5345222	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	2
Rpdx1_4978	5352947	5355028	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	3
Rpdx1_4979	5354998	5356737	+	response regulator receiver sensor signal                     transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 REC,1 HisKA,1 HATPase_c	0
Rpdx1_4980	5356734	5357474	+	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_5003	5385124	5386503	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	1
Rpdx1_5004	5386500	5387165	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Rpdx1_5015	5397928	5399031	-	response regulator receiver modulated metal                     dependent phosphohydrolase	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
