#Rhodopseudomonas palustris CGA009 (126 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
RPA0007	9442	10893	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_4,1 PAS,1 HWE_HK	0
RPA0079	89417	91963	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS,1 HisKA,1 HATPase_c	1
RPA0122	136734	139013	+	bacteriophytochrome PhyB	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
RPA0137	155814	156905	-	chemotaxis methylesterase CheB1	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
RPA0142	161217	163283	-	chemotaxis histidine kinase CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
RPA0143	163280	163645	-	response regulator receiver CheY1	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA0145	164246	165412	+	metal dependent phosphohydrolase                     domain-containing protein	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
RPA0283	311368	312054	-	two-component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA0317	344712	346622	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,2 Response_reg	2
RPA0357	386036	387781	-	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
RPA0358	387944	388645	-	two-component transcriptional regulator ChvI	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA0369	400116	402719	-	aminoacyl-tRNA synthetase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	2
RPA0494	546761	550042	+	sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	1
RPA0571	633579	634133	-	Fis family transcriptional regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
RPA0572	634225	635547	-	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
RPA0583	645698	648439	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	3
RPA0635	701052	702530	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	3
RPA0754	834822	836258	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS,1 PAS_3,1 HWE_HK	0
RPA0852	944214	944891	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPA0853	945053	948562	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	13
RPA0907	1009176	1009535	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA0979	1078825	1080273	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
RPA0980	1080263	1081615	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
RPA0981	1081721	1084108	+	sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_3,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
RPA0990	1092866	1095403	-	bacteriophytochrome PhyB	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_2,1 GAF,1 PHY,1 HWE_HK,1 Response_reg	0
RPA1175	1283518	1283913	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA1248	1365644	1366570	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPA1249	1366560	1369928	-	sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	15
RPA1268	1389068	1390447	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
RPA1295	1413532	1414743	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_2,1 HATPase_c	4
RPA1313	1433238	1435136	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	4
RPA1314	1435192	1435623	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA1315	1435620	1436306	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
RPA1322	1440217	1440915	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_2,1 HATPase_c	0
RPA1328	1447208	1451350	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	0
RPA1481	1643544	1643906	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA1489	1652068	1652739	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPA1490	1652759	1655071	-	bacteriophytochrome PhyB	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA_3,1 HATPase_c	2
RPA1556	1727226	1727915	+	phosphotransfer	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 Hpt	0
RPA1557	1727937	1728773	+	response regulator receiver	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
RPA1558	1728789	1731500	+	sensor histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 2 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
RPA1627	1807250	1810063	+	chemotaxis histidine kinase CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,2 CheW,1 Response_reg	2
RPA1629	1810628	1810993	+	chemotaxis response regulator CheY2	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA1630	1811072	1812247	+	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
RPA1632	1813413	1814114	-	two-component cell cycle transcriptional                     regulatorCtrA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA1674	1860968	1861471	+	response regulator receiver CheY3	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA1676	1864447	1867260	+	chemotaxis histidine kinase CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,2 CheW,1 Response_reg	2
RPA1680	1869241	1870491	+	response regulator and cylclic diguanylate                     phosphodiesterase	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
RPA1681	1870522	1873113	-	sensor histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
RPA1682	1873536	1874162	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPA1767	1978647	1980956	-	sensor histidine kinase/response regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Cache_1,1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	1
RPA1858	2086715	2088547	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c	5
RPA1915	2147990	2148664	+	two-component transcriptional regulator FeuP	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA1916	2148680	2150071	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
RPA1930	2165214	2165939	+	two-component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA1932	2167673	2169121	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
RPA1938	2178903	2181242	-	sensor histidine kinase pleC	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c	3
RPA1972	2220180	2221778	-	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
RPA2074	2333431	2333799	-	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 REC	0
RPA2075	2333796	2335697	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 GAF,1 PAS,1 PAS_3,1 HWE_HK	1
RPA2076	2336125	2336811	-	signal transduction histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HWE_HK	0
RPA2107	2367208	2372346	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 Pkinase,1 GAF,1 HisKA,1 HATPase_c	4
RPA2108	2372333	2372719	-	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA2109	2372808	2373443	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
RPA2135	2398973	2401096	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	3
RPA2292	2597690	2599114	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HisKA,1 HATPase_c	1
RPA2367	2682429	2683532	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
RPA2369	2683800	2684213	-	hypothetical protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA2432	2761477	2762568	-	signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA_2,1 HATPase_c	0
RPA2433	2762565	2763008	-	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA2434	2763005	2764537	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HisKA,1 HATPase_c	2
RPA2592	2947222	2948394	+	signal transduction histidine kinase nitrogen                     specific NtrB	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
RPA2593	2948404	2949846	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
RPA2594	2950006	2952297	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	4
RPA2595	2952314	2953681	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
RPA2787	3160874	3161932	+	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_3,1 HWE_HK	0
RPA2839	3215009	3215383	+	chemotaxis protein CheY	RR	unclassified	Response regulator, unclassified contains 1 REC	0
RPA3000	3395874	3396557	-	two-component osmotic transcriptional regulator                     KdpE	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA3001	3396563	3399286	-	two component osmosensitive K+channel and sensor                     histidine kinase KdpD	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
RPA3014	3410877	3411584	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
RPA3015	3411808	3414084	+	bacteriophytochrome PhyB	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	1
RPA3016	3414088	3416415	+	bacteriophytochrome PhyB	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
RPA3017	3416416	3416880	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA3018	3416877	3418013	+	response regulator receiver sensor signal                     transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA_3,1 HATPase_c	0
RPA3106	3512391	3513497	-	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_2,1 HATPase_c	0
RPA3132	3538970	3540343	-	response regulator PleD	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
RPA3133	3540354	3540719	-	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA3187	3596427	3599180	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 PAS_3, 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 	1
RPA3216	3632669	3634729	+	sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	0
RPA3316	3740366	3743506	+	chemotaxis cheB/cheR fusion protein	HK	Classic	Probable incomplete histidine kinase contains 1 CheB_methylest,1 MeTrc,1 PAS_4,1 HWE_HK	0
RPA3380	3821616	3822161	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA3381	3822179	3822769	+	Hpt domain-containing protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
RPA3570	4035633	4036355	+	two-component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA3571	4036352	4037686	+	two component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
RPA3706	4185092	4185676	+	two-component response regulator:antitermination                     factor NasT	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
RPA3882	4381871	4384519	-	sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 3 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	2
RPA3933	4441771	4444836	+	sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 3 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
RPA3934	4444803	4446011	+	sensor histidine kinase/response regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
RPA3957	4468582	4468941	-	Hpt domain-containing protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
RPA4009	4532346	4534394	+	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 2 GAF,1 HWE_HK	0
RPA4010	4534391	4534768	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA4140	4683029	4684075	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
RPA4187	4730298	4731785	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
RPA4223	4766223	4767029	-	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
RPA4226	4768147	4769913	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 CHASE,1 HWE_HK	3
RPA4247	4791190	4792716	+	two component low oxygen sensor histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 PAS,1 HisKA,1 HATPase_c	0
RPA4248	4792709	4793320	+	response regulator FixJ	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
RPA4249	4793406	4793798	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA4322	4872601	4873059	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA4367	4916339	4917727	-	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
RPA4368	4918006	4918728	-	two-component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA4417	4975255	4977876	-	sensor histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	7
RPA4513	5094008	5095012	-	signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS,1 HWE_HK	0
RPA4516	5098179	5099393	+	cylclic diguanylate phosphodiesterase	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
RPA4523	5103980	5104369	-	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA4524	5104629	5106185	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	7
RPA4738	5349417	5349797	+	chemotaxis protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
RPA4753	5364022	5365239	-	histidine kinase with a response regulator                     receiver domain	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
RPA4775	5390650	5391363	-	winged helix family two component                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA4781	5396238	5397587	-	two component sensor histidine kinase phoR	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	2
RPA4789	5405300	5407411	+	periplasmic sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	3
RPA4790	5407468	5409120	+	response regulator receiver sensor signal                     transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
RPA4791	5409117	5409857	+	two-component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA4816	5440041	5441417	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	1
RPA4817	5441414	5442079	-	two-component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
RPA4830	5453665	5454777	-	metal dependent phosphohydrolase                     domain-containing protein	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
