#Mycobacterium sp. MCS (57 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
Mmcs_0165	180346	181077	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_0166	181082	182419	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Mmcs_0350	388781	392953	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,2 HATPase_c,1 Response_reg,1 PAS,1 SpoIIE	0
Mmcs_0589	648884	649981	+	putative signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	2
Mmcs_0590	649981	650628	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Mmcs_0660	721179	722357	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
Mmcs_0661	722373	723059	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_0708	759850	760884	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
Mmcs_0709	760871	761584	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_1055	1151746	1152951	-	putative signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_3,1 HATPase_c	0
Mmcs_1056	1152948	1153607	-	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Mmcs_1069	1164909	1166369	-	cyclic nucleotide-binding protein	HK	Classic	Histidine kinase, Classic contains 1 cNMP_binding, 1 HisKA_MA, 1 HATPase_c, 	0
Mmcs_1070	1166381	1168045	-	response regulator receiver modulated                     FAD-dependent pyridine nucleotide-disulfide                     oxidoreductase	RR	TrxB	Response regulator, TrxB family contains 1 Response_reg,2 Pyr_redox	0
Mmcs_1076	1173191	1173877	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Mmcs_1077	1173934	1175634	+	GAF sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 2 GAF,1 HisKA_3,1 HATPase_c	0
Mmcs_1189	1288462	1291017	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
Mmcs_1347	1457386	1458072	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_1348	1458149	1459816	+	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Mmcs_1382	1497132	1498622	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA_2,1 HATPase_c	0
Mmcs_1438	1564898	1566082	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Mmcs_1439	1566079	1566876	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_1446	1573667	1574452	+	response regulator receiver protein	RR	OmpR	Response regulator, OmpR family contains 1 REC,1 Trans_reg_C	0
Mmcs_1581	1718758	1719162	-	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Mmcs_1619	1755633	1756124	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Mmcs_2688	2840394	2841617	+	response regulator receiver modulated serine                     phosphatase	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE	0
Mmcs_2689	2841614	2843197	+	multi-sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HAMP,1 HisKA,1 HATPase_c	2
Mmcs_2690	2843194	2843637	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Mmcs_2905	3065239	3066030	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_2906	3066027	3067166	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Mmcs_2995	3163321	3164676	+	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Mmcs_3021	3192562	3193194	-	response regulator receiver/ANTAR                     domain-containing protein	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
Mmcs_3030	3201602	3202258	-	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Mmcs_3031	3202251	3203396	-	putative signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	5
Mmcs_3238	3432717	3434336	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	1
Mmcs_3239	3434329	3434991	+	response regulator receiver/unknown                     domain-containing protein	RR	CitT	Response regulator, CitT family contains 1 Response_reg,1 CitT	0
Mmcs_3350	3549426	3550109	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Mmcs_3908	4162685	4163992	+	putative signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	4
Mmcs_3909	4163989	4164624	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Mmcs_3925	4181368	4182966	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Mmcs_3926	4182941	4183705	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_4050	4320629	4321840	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	1
Mmcs_4051	4321837	4322646	+	response regulator receiver protein	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
Mmcs_4125	4390983	4392689	-	putative signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 2 GAF,1 HisKA_3,1 HATPase_c	0
Mmcs_4126	4392699	4393361	-	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Mmcs_4177	4440744	4442321	+	signal transduction histidine kinase regulating                     citrate/malate metabolism	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	1
Mmcs_4178	4442318	4443019	+	response regulator receiver/unknown                     domain-containing protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 TrmB	0
Mmcs_4229	4489338	4491848	+	osmosensitive K+ channel signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
Mmcs_4230	4491845	4492525	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_4300	4567264	4568811	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Mmcs_4301	4568811	4569503	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_4448	4731699	4732400	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_4449	4732403	4733749	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Mmcs_4515	4793316	4794059	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_4589	4863884	4865305	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	0
Mmcs_4590	4865305	4866024	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Mmcs_4653	4930365	4931660	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	6
Mmcs_4654	4931734	4932372	+	two component LuxR family transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
