#Mycobacterium avium subsp. paratuberculosis MAP4 (38 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
MAP4_0305	352590	355424	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
MAP4_0392	443996	445591	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HAMP,1 HisKA,1 HATPase_c	2
MAP4_0393	445588	446028	+	two-component system response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
MAP4_0424	477353	478039	+	two component system transcriptional regulator                     MtrA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_0425	478101	479795	+	two component system sensor histidine kinase                     MtrB	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
MAP4_0464	518950	520449	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA_2,1 HATPase_c	1
MAP4_0510	575249	575914	-	putative nitratenitrite response transcriptional                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
MAP4_0511	575904	577064	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	3
MAP4_0514	578812	579480	+	two-component transcriptional system regulatory                     protein	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
MAP4_0515	579477	581132	+	putative two component system sensor histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 2 GAF,1 HisKA_3,1 HATPase_c	0
MAP4_0687	751787	752755	+	putative regulator of sigma factor	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
MAP4_1462	1556251	1558218	-	putative regulator of sigma subunit	HK	Classic	Histidine kinase, Classic contains 1 PAS_4, 1 SpoIIE, 1 HisKA_MA, 1 HATPase_c, 1 STAS, 	0
MAP4_2090	2304623	2306161	+	putative two component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS,1 HisKA_3,1 HATPase_c	0
MAP4_2528	2798429	2799052	-	two-component system transcriptional regulator	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
MAP4_2631	2928092	2929534	-	two component system sensor kinase phoR	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
MAP4_2632	2929531	2930253	-	two component response transcriptional                     regulatory protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_2751	3052698	3053366	+	two component DNA binding transcriptional                     regulatory protein TCRA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_2752	3053348	3054751	-	putative histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
MAP4_2857	3163403	3164176	+	two-component transcriptional regulator TrcR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_2858	3164173	3165711	+	two component sensor histidine kinase TrcS	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
MAP4_2863	3170783	3173359	+	sensor protein KdpD	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
MAP4_2864	3173409	3174089	+	transcriptional regulatory protein KdpE	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_2943	3258566	3260134	-	two component system sensor kinase mprB	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
MAP4_2944	3260151	3260837	-	two component response transcriptional                     regulatory protein MprA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_3026	3356632	3357333	+	two component system transcriptional regulator                     prrA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_3027	3357349	3358686	+	two component system sensor histidine kinase                     prrB	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
MAP4_3174	3497842	3499131	-	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	6
MAP4_3175	3499176	3499829	+	nitratenitrite response transcriptional                     regulator narL	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
MAP4_3273	3589756	3591192	-	two component system sensor kinase PhoR	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
MAP4_3274	3591233	3591952	-	two component system transcriptional regulator                     PhoP	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_3495	3805859	3808069	+	stage II sporulation protein E (SpoIIE)	HK	Classic	Histidine kinase, Classic contains 1 PAS_4, 1 SpoIIE, 1 HisKA_MA, 1 HATPase_c, 	0
MAP4_3611	3928463	3929953	-	two component system sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
MAP4_3612	3930054	3930794	-	two component system transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_3721	4051515	4052843	-	two component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
MAP4_4098	4440323	4441552	+	two component sensor histidine kinase SenX3	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
MAP4_4099	4441655	4442338	+	two component sensory transduction proteinRegX3	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
MAP4_4443	4787500	4788156	-	two-component system response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
MAP4_4444	4788153	4789373	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
