#Halomonas elongata DSM 2581 (54 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
HELO_1071	80533	81912	+	sigma-54 dependent response regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
HELO_1072	81830	83923	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 Autoind_bind,1 HAMP,1 HisKA,1 HATPase_c	2
HELO_1128	148427	149473	+	signal transduction histidine kinase, nitrogen                     specific, NtrB	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
HELO_1129	149466	150872	+	two-component response regulator NtrC	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
HELO_1217	253405	254877	-	two-component system NarL family,                     C4-dicarboxylate transport response regulator DctD	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
HELO_1218	254780	256699	-	histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
HELO_1575	662147	662809	+	response regulator OmpR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_1576	662806	664206	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
HELO_1618	710013	711773	+	sensor kinase protein	HK	Classic	Histidine kinase, Classic contains 1 CHASE3,1 HAMP,1 HisKA,1 HATPase_c	3
HELO_1620	712341	713732	+	NtrC family response regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
HELO_1626	721486	722154	+	Two-component response regulator protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_1627	722151	723551	+	Two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	2
HELO_1658	756507	758843	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE2,1 HisKA,1 HATPase_c	5
HELO_1661	762949	763692	+	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_1698	814115	815203	+	histidine kinase	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
HELO_1865	1000318	1001565	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
HELO_1866	1001624	1002289	-	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_2265	1446021	1447394	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	2
HELO_2266	1447391	1448053	-	Two-component response regulator protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_2706	1979550	1980821	+	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
HELO_2707	1980846	1981385	+	Fis family transcriptional regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
HELO_2739	2013965	2014336	+	response regulator receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
HELO_2741	2016573	2019326	+	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	13
HELO_2810	2101546	2102301	+	response regulator GacA	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
HELO_2815	2108897	2110363	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
HELO_2816	2110546	2111229	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
HELO_2840	2146466	2147836	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
HELO_2841	2147805	2148491	-	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_2855	2169762	2171627	+	nitrate/nitrite sensor protein NarX	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	2
HELO_2856	2171657	2172316	+	two component system DNA-binding response                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
HELO_3015	2364521	2367256	+	multi-sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	1
HELO_3096	2462505	2463995	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
HELO_3097	2463992	2464717	-	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_3232	2618325	2619161	+	response regulator NasT	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
HELO_3245	2632765	2633436	+	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_3246	2633433	2634782	+	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	2
HELO_3559	3003902	3007843	+	two-component sensor	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	13
HELO_3562	3009779	3010444	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
HELO_3689	3153203	3154633	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
HELO_3690	3154630	3155334	+	two-component system, OmpR family, response                     regulator BaeR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_3700	3167527	3169704	-	signal transduction histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
HELO_3715	3184735	3185451	-	two-component system, CitB family, response                     regulator DcuR	RR	CitT	Response regulator, CitT family contains 1 Response_reg,1 CitT	0
HELO_3716	3185448	3187082	-	sensory histidine kinase DcuS	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	3
HELO_3822	3315724	3316920	-	SAM-dependent methyltransferase	RR	unclassified	Response regulator, unclassified contains 1 REC	0
HELO_3887	3385597	3387243	-	integral membrane sensor signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
HELO_3888	3387243	3387962	-	response regulator OmpR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_4124	3669460	3672435	+	sensory box histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	13
HELO_4125	3672383	3673804	+	Fis family transcriptional regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 AAA_5,1 Mga	0
HELO_4320	3889263	3890762	-	sensor signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
HELO_4321	3890759	3891523	-	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_4336	3905555	3906616	-	chemotaxis protein CheB	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
HELO_4342	3913815	3915956	-	chemotaxis protein CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
HELO_4416	4000099	4000788	+	phosphate regulon transcriptional regulator                     PhoB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
HELO_4417	4000790	4002112	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
