#Escherichia fergusonii ATCC 35469 (59 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
EFER_0026	24715	25398	-	DNA-binding response regulator in two-component                     regulatory system with citA	RR	CitT	Response regulator, CitT family contains 1 Response_reg,1 CitT	0
EFER_0027	25391	27019	-	sensory histidine kinase in two-component                     regulatory system with citB	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	2
EFER_0278	293775	296531	-	hybrid sensory histidine kinase BarA	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
EFER_0519	520482	521909	+	sensory kinase in two-component system	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
EFER_0521	522777	524111	+	DNA-binding response regulator in two-component                     system	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 AAA_5	0
EFER_0709	726770	728482	-	nitrate/nitrite sensor protein NarQ	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	1
EFER_0787	804569	805303	-	response regulator in two-component system with                     YpdA	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
EFER_0788	805318	807015	-	sensory kinase in two-component system with                     YpdB	HK	Classic	Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c	5
EFER_0899	915671	916705	-	chemotaxis protein (cheV-like)	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
EFER_0941	963531	965357	-	sensory histidine kinase AtoS	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	3
EFER_0942	965524	968373	+	hybrid sensory kinase in two-component                     regulatory system with RcsB and YojN	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	3
EFER_0943	968457	969107	-	transcriptional regulator RcsB	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
EFER_0944	969124	971997	-	phosphotransfer intermediate protein in                     two-component regulatory system with RcsBC	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c, 1 Hpt, 	0
EFER_1133	1173716	1175731	+	chemotaxis protein CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
EFER_1143	1184219	1185268	+	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
EFER_1144	1185283	1185672	+	chemotaxis regulatory protein CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
EFER_1180	1219146	1219802	+	response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
EFER_1188	1227894	1230638	-	hybrid sensory histidine kinase TorS	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
EFER_1190	1231716	1232408	-	DNA-binding transcriptional regulator TorR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_1428	1468478	1469764	-	sensor protein RstB	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
EFER_1429	1469777	1470538	-	DNA-binding transcriptional regulator RstA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_1720	1768808	1769869	-	response regulator of RpoS	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
EFER_1738	1788622	1790418	+	nitrate/nitrite sensor protein NarX	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	2
EFER_1739	1790411	1791061	+	transcriptional regulator NarL	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
EFER_1800	1854891	1855562	+	DNA-binding transcriptional regulator PhoP	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_1801	1855562	1857022	+	sensor protein PhoQ	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
EFER_2165	2206156	2207559	+	signal transduction histidine-protein kinase                     BaeS	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
EFER_2166	2207556	2208278	+	DNA-binding transcriptional regulator BaeR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_2211	2266867	2267586	-	two-component response-regulatory protein YehT	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
EFER_2212	2267583	2269268	-	sensory kinase in two-component system with                     YehT	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 His_kinase,1 HATPase_c	7
EFER_2283	2342911	2343561	+	transcriptional regulator NarP	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
EFER_2415	2476286	2478970	+	sensor protein KdpD	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
EFER_2416	2478967	2479644	+	DNA-binding transcriptional activator KdpE	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_2540	2603799	2604482	+	DNA-binding transcriptional activator CusR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_2541	2604460	2605920	+	sensor kinase CusS	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
EFER_2626	2696062	2697357	-	phosphate regulon sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
EFER_2627	2697416	2698105	-	transcriptional regulator PhoB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_2967	3036645	3037304	+	DNA-binding transcriptional regulator QseB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_2968	3037301	3038656	+	sensor protein QseC	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
EFER_3187	3270094	3272430	-	aerobic respiration control sensor protein ArcB	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
EFER_3372	3429627	3430979	-	osmolarity sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
EFER_3373	3430976	3431695	-	osmolarity response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_3750	3844572	3845897	-	transcriptional regulatory protein ZraR	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
EFER_3751	3845894	3847270	-	sensor protein ZraS	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
EFER_3860	3954015	3954713	+	DNA-binding transcriptional regulator CpxR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_3861	3954710	3956083	+	two-component sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
EFER_3904	4004189	4005238	+	nitrogen regulation protein NR(II)	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
EFER_3905	4005250	4006659	+	nitrogen regulation protein NR(I)	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
EFER_3965	4068781	4070283	-	sensory histidine kinase UhpB	HK	Classic	Histidine kinase, Classic contains 1 MASE1,1 HisKA_3,1 HATPase_c	7
EFER_3966	4070283	4070873	-	DNA-binding transcriptional activator UhpA	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
EFER_4155	4257713	4259071	-	C4-dicarboxylate transport transcriptional                     regulatory protein	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
EFER_4156	4259061	4260884	-	C4-dicarboxylate transport sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
EFER_4171	4277470	4278612	-	sensor protein BasS/PmrB	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
EFER_4172	4278609	4279298	-	DNA-binding transcriptional regulator BasR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_4178	4286696	4287418	-	DNA-binding transcriptional activator DcuR	RR	CitT	Response regulator, CitT family contains 1 Response_reg,1 CitT	0
EFER_4179	4287415	4289046	-	sensory histidine kinase DcuS	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	2
EFER_4497	4582925	4583614	+	DNA-binding response regulator CreB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
EFER_4498	4583614	4585038	+	sensory histidine kinase CreC	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
EFER_4500	4586519	4587235	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
