#Escherichia coli IHE3034 (64 genes) Gene Start Stop Strand Original description class type P2CS description tm ECOK1_0379 420684 421373 + phosphate regulon transcriptional regulatory protein PhoB RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_0380 421431 422726 + phosphate regulon sensor protein PhoR HK Classic Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c 1 ECOK1_0579 615583 617025 - sensor histidine kinase CusS HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 ECOK1_0580 617015 617698 - transcriptional regulatory protein cusR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_0630 671361 673019 + sensor histidine kinase DpiB HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c 3 ECOK1_0631 672988 673668 + transcriptional regulatory protein DpiA RR CitT Response regulator, CitT family contains 1 Response_reg,1 CitT 0 ECOK1_0703 739730 740407 - KDP operon transcriptional regulatory protein KdpE RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_0704 740404 743088 - sensor protein KdpD HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 4 ECOK1_1046 1084825 1087527 - sensor histidine kinase/response regulator TorS HK Unorthodox Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt 1 ECOK1_1047 1088641 1089333 - torCAD operon transcriptional regulatory protein TorR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_1237 1276392 1277852 - sensor histidine kinase PhoQ HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 ECOK1_1238 1277852 1278523 - DNA-binding response regulator PhoP RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_1343 1363801 1364655 - ModD protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 ECOK1_1375 1393666 1394316 - nitrate/nitrite response regulator protein NarL RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 ECOK1_1376 1394309 1396105 - nitrate/nitrite sensor protein NarX HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c 2 ECOK1_1389 1409395 1410408 + response regulator receiver domain-containing protein RR unclassified Response regulator, unclassified contains 1 Response_reg,1 PP2C_SIG 0 ECOK1_1726 1759135 1759854 + transcriptional regulator RstA RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_1727 1759858 1761159 + sensor histidine kinase RstB HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 ECOK1_2000 2029201 2029590 - chemotaxis protein CheY RR CheY Response regulator, CheY family contains 1 Response_reg 0 ECOK1_2001 2029605 2030654 - chemotaxis response regulator protein-glutamate methylesterase RR CheB Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest 0 ECOK1_2006 2034138 2036102 - chemotaxis protein CheA HK CheA Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW 0 ECOK1_2031 2054695 2055351 - response regulator UvrY RR NarL Response regulator, NarL family contains 1 Response_reg,1 GerE 0 ECOK1_2081 2099062 2100420 - heavy metal sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 1 ECOK1_2082 2100420 2101202 - heavy metal response regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_2308 2378428 2379831 + sensor histidine kinase BaeS HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 ECOK1_2309 2379828 2380550 + DNA-binding response regulator BaeR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_2355 2431635 2432354 - DNA-binding response regulator RR LytTR Response regulator, LytTR family contains 1 Response_reg,1 LytTR 0 ECOK1_2356 2432351 2434036 - sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 GAF,1 His_kinase,1 HATPase_c 7 ECOK1_2427 2505727 2506374 + LuxR family DNA-binding response regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 GerE 0 ECOK1_2451 2527962 2530634 + sensor histidine kinase YojN HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c, 1 Hpt, 1 ECOK1_2452 2530651 2531301 + capsular synthesis regulator component B RR NarL Response regulator, NarL family contains 1 Response_reg,1 GerE 0 ECOK1_2453 2531501 2534350 - sensor histidine kinase/response regulator RcsC HK Hybrid Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg 3 ECOK1_2454 2534517 2536343 + sensory box histidine kinase AtoS HK Classic Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c 3 ECOK1_2455 2536340 2537725 + acetoacetate metabolism regulatory protein AtoC RR NtrC Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8 0 ECOK1_2685 2760257 2760871 + positive transcription regulator EvgA RR NarL Response regulator, NarL family contains 1 Response_reg,1 GerE 0 ECOK1_2686 2760876 2764469 + sensor histidine kinase/response regulator EvgS HK Unorthodox Histidine kinase, Unorthodox contains 2 PBPb,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt 3 ECOK1_2696 2775191 2776870 + sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c 7 ECOK1_2697 2776885 2777622 + response regulator RR LytTR Response regulator, LytTR family contains 1 Response_reg,1 LytTR 0 ECOK1_2776 2850591 2852291 + nitrate/nitrite sensor histidine kinase NarQ HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c 2 ECOK1_2898 2984149 2985483 - sigma-54 dependent response regulator RR unclassified Response regulator, unclassified contains 1 Response_reg,1 AAA_5 0 ECOK1_2900 2986351 2987733 - sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 1 ECOK1_3160 3222566 3225322 + sensor histidine kinase/response regulator BarA HK Unorthodox Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt 2 ECOK1_3446 3540249 3540908 + transcriptional regulatory protein QseB RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_3447 3540905 3542254 + sensor histidine kinase QseC HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 ECOK1_3631 3723444 3725780 - aerobic respiration control sensor protein ArcB HK Unorthodox Histidine kinase, Unorthodox contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt 2 ECOK1_3818 3900083 3901435 - osmolarity sensor protein EnvZ HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 ECOK1_3819 3901432 3902151 - transcriptional regulatory protein OmpR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_4121 4227553 4229046 - sensor histidine kinase UhpB HK Classic Histidine kinase, Classic contains 1 MASE1,1 HisKA_3,1 HATPase_c 7 ECOK1_4122 4229055 4229645 - transcriptional regulatory protein UhpA RR NarL Response regulator, NarL family contains 1 Response_reg,1 GerE 0 ECOK1_4339 4452058 4453467 - nitrogen regulation protein NR(I) RR NtrC Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8 0 ECOK1_4340 4453479 4454528 - nitrogen regulation protein NR(II) HK Classic Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c 0 ECOK1_4380 4492686 4494059 - sensor histidine kinase CpxA HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 ECOK1_4381 4494056 4494754 - transcriptional regulatory protein CpxR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_4479 4602456 4603832 + sensor histidine kinase ZraS HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 3 ECOK1_4481 4603829 4605154 + response regulator ZraR RR NtrC Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8 0 ECOK1_4553 4687025 4688383 - sigma-54 dependent DNA-binding response regulator, Fis family RR NtrC Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8 0 ECOK1_4555 4688376 4690196 - sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 2 ECOK1_4624 4758207 4759298 - sensor histidine kinase BasS HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 ECOK1_4625 4759308 4759976 - DNA-binding response regulator BasR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_4636 4773697 4774416 - transcriptional regulatory protein DcuR RR CitT Response regulator, CitT family contains 1 Response_reg,1 CitT 0 ECOK1_4637 4774413 4776044 - sensory box sensor histidine kinase DcuS HK Classic Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 3 ECOK1_4968 5102738 5103427 + transcriptional regulatory protein CreB RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 ECOK1_4969 5103427 5104851 + sensor protein CreC HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 ECOK1_4971 5106321 5107037 - aerobic respiration control protein RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0