#Desulfitobacterium hafniense DCB-2 (126 genes) Gene Start Stop Strand Original description class type P2CS description tm Dhaf_0040 37970 39280 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 Dhaf_0041 39273 39968 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_0099 100670 103027 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c 11 Dhaf_0100 103081 103767 + LuxR family transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Dhaf_0197 219984 221294 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 0 Dhaf_0198 221287 222672 + Fis family transcriptional regulator RR NtrC Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8 0 Dhaf_0286 318166 319914 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 Dhaf_0287 319911 320600 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_0410 448961 450091 - SARP family transcriptional regulator RR unclassified Response regulator, unclassified contains 1 Response_reg,1 BTAD 0 Dhaf_0411 450151 453207 - signal transduction histidine kinase LytS HK Hybrid Histidine kinase, Hybrid contains 1 HisKA,2 HATPase_c,1 Response_reg,1 His_kinase 7 Dhaf_0493 539758 542826 + signal transduction histidine kinase LytS HK Hybrid Histidine kinase, Hybrid contains 1 HisKA,2 HATPase_c,1 Response_reg,1 His_kinase 9 Dhaf_0494 542910 544847 + signal transduction histidine kinase LytS HK Classic Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c 7 Dhaf_0495 544874 545971 + SARP family transcriptional regulator RR Sarp Response regulator, Sarp family contains 1 Response_reg,1 Trans_reg_C,1 BTAD 0 Dhaf_0497 550925 552016 + SARP family transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_0512 563484 563870 - SARP family transcriptional regulator RR CheY Response regulator, CheY family contains 1 Response_reg 0 Dhaf_0521 573143 573883 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_0522 573980 574975 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 3 Dhaf_0916 1007586 1009385 + signal transduction histidine kinase, nitrogen specific, NtrB HK Classic Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c 3 Dhaf_0940 1031928 1032641 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_0941 1032634 1034256 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_0995 1082339 1082911 + response regulator receiver and ANTAR domain-containing protein RR AmiR_NasR Response regulator, AmiR_NasR family contains 1 REC,1 ANTAR 0 Dhaf_1005 1091976 1092659 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1006 1092656 1094167 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_1193 1288984 1290477 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c 2 Dhaf_1194 1290461 1291114 + LuxR family transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Dhaf_1204 1300049 1302388 + multi-sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 PAS,1 GAF,1 HisKA_3,1 HATPase_c 1 Dhaf_1205 1302357 1302995 + LuxR family transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Dhaf_1230 1324871 1325518 - LuxR family transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Dhaf_1231 1325523 1326971 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c 3 Dhaf_1237 1331631 1332335 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1239 1333286 1333963 - response regulator receiver and unknown domain-containing protein RR IclR Response regulator, IclR family contains 1 Response_reg,1 HTH_IclR 0 Dhaf_1240 1333935 1335560 - signal transduction histidine kinase regulating citrate/malate metabolism HK Classic Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 3 Dhaf_1253 1351462 1353378 + signal transduction histidine kinase, nitrogen specific, NtrB HK Classic Histidine kinase, Classic contains 1 PAS_3,1 PAS,1 HisKA,1 HATPase_c 0 Dhaf_1284 1381577 1383259 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_1285 1383284 1383988 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1339 1446302 1447582 + signal transduction histidine kinase LytS HK Classic Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c 1 Dhaf_1366 1473409 1474800 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_1367 1474805 1475497 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1528 1630267 1631436 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 1 Dhaf_1529 1631512 1632198 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1561 1666160 1667527 + response regulator receiver modulated diguanylate cyclase RR PleD Response regulator, PleD family contains 1 PAS,1 Response_reg,1 GGDEF 0 Dhaf_1567 1671565 1674615 + signal transduction histidine kinase LytS HK Hybrid Histidine kinase, Hybrid contains 1 HisKA,2 HATPase_c,1 Response_reg,1 His_kinase 9 Dhaf_1568 1674708 1675574 + SARP family transcriptional regulator RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Dhaf_1586 1695903 1697324 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 3 Dhaf_1587 1697328 1698023 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1613 1720920 1722704 + histidine kinase HK Classic Histidine kinase, Classic contains 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 3 Dhaf_1614 1722701 1723831 + SARP family transcriptional regulator RR Sarp Response regulator, Sarp family contains 1 Response_reg,1 Trans_reg_C,1 BTAD 0 Dhaf_1665 1780778 1781476 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1666 1781466 1782599 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 3 Dhaf_1673 1790101 1790802 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1674 1790799 1791857 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_1740 1868966 1869643 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1741 1869640 1870710 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_1752 1880013 1880699 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1753 1880696 1882432 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_1756 1884944 1885636 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1757 1885670 1887514 + PAS/PAC sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c 3 Dhaf_1841 1967270 1968562 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 2 Dhaf_1865 1991637 1992941 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 Dhaf_1866 1992934 1993638 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_1994 2147528 2148238 + LytTR family transcriptional regulator RR LytTR Response regulator, LytTR family contains 1 Response_reg,1 LytTR 0 Dhaf_2146 2310563 2311249 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_2147 2311251 2312213 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 1 Dhaf_2158 2323365 2324975 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 Dhaf_2159 2324972 2325655 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_2193 2369614 2370327 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_2194 2370324 2371718 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 Dhaf_2217 2395859 2396269 + response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Dhaf_2230 2409328 2410812 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_2231 2410802 2411482 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_2285 2468204 2469736 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 Dhaf_2286 2469726 2470421 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_2301 2485502 2486179 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_2302 2486172 2487398 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 2 Dhaf_2353 2542965 2543360 + response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Dhaf_2424 2615949 2617220 - signal transduction histidine kinase regulating citrate/malate metabolism HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c 6 Dhaf_2425 2617222 2617950 - LytTR family transcriptional regulator RR LytTR Response regulator, LytTR family contains 1 Response_reg,1 LytTR 0 Dhaf_2452 2646244 2647470 + signal transduction histidine kinase LytS HK Classic Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c 5 Dhaf_2789 2993502 2994140 - LuxR family transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Dhaf_2790 2994137 2995318 - sensor DegS domain-containing protein HK Classic Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c 0 Dhaf_2918 3128604 3129302 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_2920 3131400 3132839 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_2939 3154540 3156759 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 6 Dhaf_2940 3156734 3157420 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_3021 3242511 3243305 - sporulation transcriptional activator Spo0A RR Spo0A Response regulator, Spo0A family contains 1 Response_reg,1 Spo0A_C 0 Dhaf_3229 3458087 3459919 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 9 Dhaf_3421 3657199 3657813 - LuxR family transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Dhaf_3481 3714657 3715475 - sporulation transcriptional activator Spo0A RR Spo0A Response regulator, Spo0A family contains 1 Response_reg,1 Spo0A_C 0 Dhaf_3592 3813670 3815373 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 1 Dhaf_3593 3815370 3816050 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_3686 3920325 3921080 - LytTR family transcriptional regulator RR LytTR Response regulator, LytTR family contains 1 Response_reg,1 LytTR 0 Dhaf_3688 3921887 3922729 - signal transduction histidine kinase regulating citrate/malate metabolism HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c 2 Dhaf_3738 3975132 3976937 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c 2 Dhaf_3739 3976964 3977656 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_3868 4107049 4108413 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Dhaf_3869 4108410 4109129 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_3946 4187362 4188258 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 1 Dhaf_3949 4190152 4190811 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_3979 4231025 4232071 + AraC family transcriptional regulator RR YesN Response regulator, YesN family contains 1 Response_reg,1 HTH_AraC 0 Dhaf_3980 4232092 4234071 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 0 Dhaf_4049 4297336 4298742 - PAS/PAC sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c 2 Dhaf_4050 4298746 4299429 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_4095 4345584 4345994 + response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Dhaf_4140 4386315 4386677 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Dhaf_4153 4397968 4399146 - response regulator receiver modulated CheB methylesterase RR CheB Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest 0 Dhaf_4155 4399642 4401831 - CheA signal transduction histidine kinase HK CheA Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW 0 Dhaf_4304 4560685 4561734 - SARP family transcriptional regulator RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Dhaf_4305 4561770 4563734 - signal transduction histidine kinase LytS HK Classic Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c 9 Dhaf_4310 4570257 4570982 - response regulator receiver and unknown domain-containing protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Dhaf_4311 4570979 4572580 - sensory histidine kinase DcuS HK Classic Histidine kinase, Classic contains 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 3 Dhaf_4408 4679143 4679949 + LytTR family transcriptional regulator RR LytTR Response regulator, LytTR family contains 1 Response_reg,1 LytTR 0 Dhaf_4540 4830897 4831283 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Dhaf_4541 4831264 4833954 - multi-sensor hybrid histidine kinase HK Unorthodox Histidine kinase, Unorthodox contains 1 PAS_3,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt 0 Dhaf_4590 4886944 4888677 - sensor with HAMP domain HK Classic Histidine kinase, Classic contains 1 Cache_1,1 HAMP,1 His_kinase,1 HATPase_c 2 Dhaf_4591 4888674 4889471 - AraC family transcriptional regulator RR YesN Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC 0 Dhaf_4625 4926729 4928246 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 3 Dhaf_4626 4928236 4928934 + transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_4644 4952884 4953579 - response regulator receiver RR IclR Response regulator, IclR family contains 1 Response_reg,1 HTH_IclR 0 Dhaf_4645 4953625 4955214 - signal transduction histidine kinase regulating citrate/malate metabolism HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c 2 Dhaf_4673 4984217 4986358 + PAS/PAC sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 Cache_1,1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c 3 Dhaf_4674 4986355 4987746 + Fis family transcriptional regulator RR NtrC Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8 0 Dhaf_4687 5001131 5001823 - transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Dhaf_4693 5007914 5009599 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 Dhaf_4779 5104656 5106140 - Fis family transcriptional regulator RR NtrC Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8 0 Dhaf_4780 5106103 5108331 - histidine kinase HK Classic Histidine kinase, Classic contains 1 Cache_1,1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c 3 Dhaf_4841 5158988 5159344 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0