#Dechloromonas aromatica RCB (205 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
Daro_0007	7338	8477	-	response regulator receiver modulated metal                     dependent phosphohydrolase	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Daro_0008	8504	12823	-	hypothetical protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 Cache_1,1 HAMP,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	3
Daro_0012	16355	17488	-	response regulator receiver	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Daro_0030	33669	35825	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c	3
Daro_0031	35803	37068	+	Fis family transcriptional regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
Daro_0040	45412	48993	-	PAS/PAC sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_3,2 PAS_4,1 PAS,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	0
Daro_0110	126495	127385	+	response regulator receiver	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg, 1 HisKA_MA, 1 HATPase_c, 	1
Daro_0145	159290	160639	-	response regulator receiver:tetratricopeptide                     TPR_4	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Daro_0146	160639	161247	-	ATP-binding region, ATPase-like	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	0
Daro_0223	244573	248217	-	PAS	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_3,1 Cache_1,1 HAMP,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	3
Daro_0224	248540	249271	-	response regulator receiver:transcriptional                     regulatory protein, C-terminal	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_0225	249268	251289	-	PAS	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	1
Daro_0232	259943	262159	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	4
Daro_0240	268653	271670	-	hypothetical protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	1
Daro_0244	277255	280455	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 Cache_2,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	1
Daro_0264	305705	306370	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Daro_0265	306340	308433	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
Daro_0347	379624	381165	-	PAS	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 PAS,1 SpoIIE	0
Daro_0420	460751	463114	+	PAS	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	6
Daro_0429	472916	473587	+	response regulator receiver:transcriptional                     regulatory protein, C-terminal	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_0430	473565	475070	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	2
Daro_0460	506968	509475	+	response regulator receiver:ATP-binding region,                     ATPase-like:histidine kinase A, N-terminal	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	2
Daro_0477	537517	538848	-	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_0478	538845	540695	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
Daro_0551	610771	613851	-	PAS	HK	Hybrid	Histidine kinase, Hybrid contains 1 CHASE,1 PAS_4,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	2
Daro_0555	616331	617131	+	response regulator receiver	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
Daro_0562	625794	626381	-	excisionase	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Daro_0575	641979	642662	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_0657	722578	723681	-	metal-dependent phosphohydrolase	PP	HPt	Phosphotransfer protein contains 1 Hpt,1 HD	0
Daro_0661	726592	728205	+	signal transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	5
Daro_0662	728163	729518	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_0685	755852	757459	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 MASE1,1 HisKA,1 HATPase_c	8
Daro_0686	757449	758060	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Daro_0704	771712	772392	+	response regulator receiver:transcriptional                     regulatory protein, C-terminal	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_0705	772394	773539	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Daro_0709	778723	779691	-	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
Daro_0725	793579	793944	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_0726	794033	796387	+	chemotaxis protein CheW	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Daro_0732	803769	804821	+	response regulator receiver modulated CheB                     methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Daro_0734	805342	806310	+	response regulator receiver:CheW-like protein	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
Daro_0735	806328	807263	+	response regulator receiver:CheW-like protein	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
Daro_0736	807288	807683	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_0738	808568	810487	+	chemotaxis protein CheW	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	1
Daro_0774	841787	842980	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	0
Daro_0775	842973	844346	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_0829	900516	901091	+	response regulator receiver:ANTAR	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
Daro_0833	904633	906573	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 GAF,1 HisKA_3,1 HATPase_c	3
Daro_0834	906575	907240	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Daro_0937	1014784	1017342	+	response regulator receiver:ATP-binding region,                     ATPase-like:histidine kinase A, N-terminal:Hpt	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	0
Daro_0965	1047835	1049880	-	PAS:hemerythrin HHE cation binding region	HK	Classic	Histidine kinase, Classic contains 1 Hemerythrin,1 PAS_4,1 HisKA,1 HATPase_c	0
Daro_0966	1049883	1052123	-	type II secretion system protein E	RR	PilB	Response regulator, PilB family contains 1 Response_reg,1 GSPII_E	0
Daro_0967	1052120	1053325	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
Daro_0969	1053973	1054539	-	response regulator receiver	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Daro_0970	1054536	1055852	-	response regulator receiver	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Daro_0971	1055849	1059412	-	PAS	HK	Classic	Histidine kinase, Classic contains 3 PAS_3, 1 GAF, 1 HisKA_MA, 1 HATPase_c, 	4
Daro_0972	1059402	1062386	-	response regulator receiver modulated                     diguanylate cyclase/phosphodiesterase with PAS/PAC                     sensor(s)	RR	PleD_VieA	Response regulator, PleD_VieA family contains 2 Response_reg,1 PAS_3,1 PAS,1 GGDEF,1 EAL	0
Daro_0973	1062401	1065595	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	2
Daro_1005	1098135	1099628	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Daro_1009	1102570	1104537	+	response regulator receiver:ATP-binding region,                     ATPase-like:histidine kinase A, N-terminal	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	2
Daro_1029	1129889	1131277	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	0
Daro_1030	1131274	1131921	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Daro_1079	1182242	1182934	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_1080	1182935	1185643	-	osmosensitive K+ channel signal transduction                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	4
Daro_1139	1244490	1244855	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_1142	1246451	1248676	+	chemotaxis protein CheW	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Daro_1148	1252840	1253919	+	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Daro_1180	1287020	1287685	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_1181	1287675	1289084	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	3
Daro_1203	1306776	1307897	+	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
Daro_1330	1446842	1448044	+	response regulator receiver	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Daro_1399	1527460	1529511	+	PAS	HK	Classic	Histidine kinase, Classic contains 1 Cache_1,1 PAS,1 HisKA_3,1 HATPase_c	2
Daro_1400	1529514	1530164	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Daro_1441	1566315	1568699	+	PAS	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	3
Daro_1445	1572557	1573483	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Daro_1446	1573470	1576865	-	response regulator receiver:ATP-binding region,                     ATPase-like:histidine kinase A, N-terminal	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	14
Daro_1488	1605113	1606708	-	PAS	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	0
Daro_1572	1685785	1686441	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Daro_1573	1686438	1687559	-	response regulator receiver:ATP-binding region,                     ATPase-like:histidine kinase, dimerization and                     phosphoacceptor region	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA_3,1 HATPase_c	0
Daro_1574	1687562	1690087	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	2
Daro_1580	1698053	1699441	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HisKA,1 HATPase_c	2
Daro_1581	1699425	1700096	-	response regulator receiver:transcriptional                     regulatory protein, C-terminal	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_1585	1702781	1703314	-	Fis family transcriptional regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
Daro_1586	1703311	1704570	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Daro_1596	1711088	1711480	-	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_1597	1711495	1712436	-	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
Daro_1614	1730792	1733413	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	6
Daro_1622	1739474	1741882	-	PAS	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	7
Daro_1623	1742158	1743435	+	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
Daro_1631	1751491	1754202	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	13
Daro_1632	1754219	1754590	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_1661	1784433	1785230	-	response regulator receiver	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
Daro_1665	1789912	1790853	-	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
Daro_1667	1791962	1793920	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
Daro_1680	1808843	1809235	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_1771	1906192	1907541	-	PAS:GGDEF	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 PAS_3,1 GGDEF	0
Daro_1772	1907557	1911066	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	4
Daro_1802	1938916	1940364	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Daro_1804	1940893	1942302	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_1822	1958582	1960330	-	response regulator receiver:ATP-binding region,                     ATPase-like:histidine kinase A, N-terminal	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	6
Daro_1827	1965079	1966476	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_1828	1966455	1968479	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Daro_1878	2020355	2021044	+	response regulator receiver:transcriptional                     regulatory protein, C-terminal	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_1879	2021022	2022425	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	1
Daro_1896	2036562	2039159	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	6
Daro_1934	2080560	2083607	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	2
Daro_1976	2124344	2127235	+	PAS:GGDEF	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS_3,1 GGDEF,1 EAL	0
Daro_1979	2128381	2129682	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Daro_1980	2129688	2130419	-	osmolarity response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_2048	2208515	2210998	-	response regulator receiver modulated                     diguanylate cyclase/phosphodiesterase with PAS/PAC                     sensor(s)	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,2 PAS,1 GGDEF,1 EAL	0
Daro_2093	2249600	2250313	-	two-component response-regulatory protein YehT	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
Daro_2094	2250294	2252027	-	GAF:ATP-binding region, ATPase-like:histidine                     kinase internal region:5TM Receptors of the LytS-YhcK                     type, transmembrane region	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 His_kinase,1 HATPase_c	5
Daro_2105	2266119	2268161	-	PAS	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,2 Response_reg	1
Daro_2148	2317395	2318723	-	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
Daro_2150	2319059	2320834	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
Daro_2187	2361598	2362581	-	hypothetical protein	PP	HisKa	Phosphotransfer protein contains 1 His_kinase	0
Daro_2258	2445131	2446522	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Daro_2259	2446519	2447196	-	two component heavy metal response                     transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_2297	2479392	2480807	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Daro_2298	2480783	2481448	-	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_2343	2523753	2524388	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Daro_2344	2524404	2524775	-	hypothetical protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
Daro_2378	2561443	2564148	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	2
Daro_2437	2634565	2636679	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	10
Daro_2438	2636676	2638031	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_2473	2671798	2673165	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Daro_2474	2673168	2673839	-	heavy metal response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_2490	2687932	2689734	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 PBPb,1 HisKA,1 HATPase_c	2
Daro_2491	2689731	2690366	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Daro_2585	2784466	2785872	-	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_2586	2786011	2787882	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Daro_2600	2799848	2801194	-	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_2601	2801178	2802632	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Daro_2749	2943053	2944420	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Daro_2754	2950191	2954018	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS,1 HisKA,1 HATPase_c,2 Response_reg	4
Daro_2787	2991543	2994272	+	Hpt sensor hybrid histidine kinase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	3
Daro_2788	2994269	2996416	+	response regulator receiver modulated                     diguanylate cyclase/phosphodiesterase	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS_3,1 GGDEF,1 EAL	0
Daro_2798	3003823	3004743	-	response regulator receiver	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
Daro_2811	3017686	3020757	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	1
Daro_2815	3022429	3023085	+	response regulator receiver:transcriptional                     regulatory protein, C-terminal	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_2816	3023096	3024445	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
Daro_2825	3033482	3035128	+	PAS:GGDEF	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 PAS,1 PAS_4,1 GGDEF	0
Daro_2847	3062612	3064906	-	PAS	HK	Hybrid	Histidine kinase, Hybrid contains 3 Response_reg,1 PAS,1 HisKA,1 HATPase_c	0
Daro_2890	3111709	3114870	+	peptidase M52, hydrogen uptake protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	0
Daro_2891	3115077	3117653	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 Cache_1,1 HisKA,1 HATPase_c,2 Response_reg	2
Daro_2901	3126688	3127026	-	hypothetical protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
Daro_2902	3127080	3128132	-	response regulator receiver	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Daro_2923	3150241	3151593	-	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_2924	3151586	3153073	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Daro_2934	3161618	3164485	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 CHASE,2 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	3
Daro_2946	3180722	3183055	-	response regulator receiver:ATP-binding region,                     ATPase-like:histidine kinase, HAMP region:histidine kinase                     A, N-terminal	HK	Hybrid	Histidine kinase, Hybrid contains 1 Cache_1,1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	3
Daro_2960	3199487	3200059	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_2995	3233258	3235246	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	3
Daro_2996	3235243	3235839	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Daro_3005	3242897	3243982	+	response regulator receiver	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Daro_3006	3244155	3248837	+	PAS	HK	Unorthodox	Histidine kinase, Unorthodox contains 4 CBS,4 PAS_3,1 GAF,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	0
Daro_3017	3261606	3263180	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
Daro_3107	3348962	3351361	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	3
Daro_3108	3351354	3351962	+	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 GerE	0
Daro_3146	3385439	3386143	+	response regulator receiver:transcriptional                     regulatory protein, C-terminal	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_3147	3386130	3387566	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Daro_3172	3409945	3411069	-	response regulator receiver	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Daro_3176	3414577	3415257	+	DNA-binding response regulator CreB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_3177	3415265	3416689	+	sensory histidine kinase CreC	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Daro_3284	3535014	3537584	+	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
Daro_3285	3537581	3538669	+	response regulator receiver	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Daro_3308	3557030	3559567	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Daro_3309	3559560	3559925	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_3349	3604929	3605309	-	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_3350	3605306	3608077	-	hypothetical protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	2
Daro_3351	3608074	3608463	-	hypothetical protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
Daro_3352	3608606	3609310	+	response regulator receiver:transcriptional                     regulatory protein, C-terminal	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_3403	3652257	3653741	+	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_3415	3666663	3668345	-	ATP-binding region, ATPase-like	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	7
Daro_3458	3706019	3707116	-	response regulator receiver	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Daro_3459	3707113	3710280	-	hypothetical protein	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	3
Daro_3542	3792927	3793301	+	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_3549	3799074	3802022	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	3
Daro_3553	3806252	3807406	-	response regulator receiver	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Daro_3557	3811812	3812504	-	response regulator receiver:transcriptional                     regulatory protein, C-terminal	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_3558	3812501	3814039	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
Daro_3567	3820914	3821600	+	phosphate regulon transcriptional regulatory                     protein phoB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Daro_3568	3821606	3822898	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
Daro_3679	3954210	3954998	-	LytR/AlgR family transcriptional regulator	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
Daro_3680	3954965	3955990	-	hypothetical protein	PP	HisKa	Phosphotransfer protein contains 1 His_kinase	0
Daro_3686	3960141	3962003	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	3
Daro_3688	3963234	3964865	+	response regulator receiver modulated                     diguanylate cyclase	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
Daro_3714	3990834	3993920	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 PBPb,2 PAS,1 HisKA,1 HATPase_c,1 Response_reg	2
Daro_3743	4020630	4022798	-	response regulator receiver modulated                     diguanylate cyclase/phosphodiesterase with PAS/PAC                     sensor(s)	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS,1 GGDEF,1 EAL	0
Daro_3744	4022795	4024951	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HDOD,1 HisKA,1 HATPase_c	0
Daro_3758	4040565	4041995	-	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Daro_3759	4042027	4043097	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
Daro_3812	4094847	4095473	-	LuxR family transcriptional regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Daro_3813	4095470	4098361	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,2 HisKA,2 HATPase_c,1 Response_reg,1 PAS	0
Daro_3821	4105108	4107387	-	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 Cache_1,1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	1
Daro_3846	4137749	4140331	-	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	3
Daro_3872	4165770	4168331	-	PAS	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
Daro_3895	4185681	4191281	-	response regulator receiver:CheW-like                     protein:ATP-binding region, ATPase-like:Hpt	HK	CheA	Histidine kinase, CheA contains 4 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg	0
Daro_3898	4193980	4194345	-	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_3899	4194360	4194770	-	response regulator receiver	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Daro_3946	4243617	4244963	-	PAS/PAC sensor signal transduction histidine                     kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	0
Daro_3962	4259451	4260938	-	Fis family transcriptional regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA,1 HTH_8	0
Daro_4037	4335904	4337883	+	hypothetical protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	2
Daro_4086	4379691	4381586	+	response regulator receiver:ATP-binding region,                     ATPase-like:histidine kinase, HAMP region:histidine kinase                     A, N-terminal	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	1
Daro_4101	4399999	4401717	-	response regulator receiver:tetratricopeptide                     TPR_4	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
Daro_4142	4441175	4443925	+	PAS/PAC sensor hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_3,1 PAS_4,1 HisKA,1 HATPase_c,2 Response_reg	1
