#Cycloclasticus sp. P1 (37 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
Q91_0028	28101	29171	+	ATP-binding region, ATPase-like:Histidine kinase                     A	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	0
Q91_0029	29241	30653	+	Fis family nitrogen metabolism transcriptional                     regulator NtrC	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Q91_0294	304481	305851	-	Sigma 54-dependent transcriptional activator                     containing CheY-like receiver domain	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
Q91_0295	305858	307489	-	ATPase, histidine kinase-, DNA gyrase B-, and                     HSP90-like domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	5
Q91_0305	319649	320344	+	Two component transcriptional regulator PhoB,                     winged helix family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Q91_0306	320341	321645	+	PAS:ATP-binding region, ATPase-like:Histidine                     kinase A	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
Q91_0451	459027	461807	+	ATPase, histidine kinase-, DNA gyrase B-, and                     HSP90-like domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 Cache_1,1 HAMP,1 PAS,1 HisKA,1 HATPase_c	0
Q91_0452	462194	463258	+	response regulator receiver:Metal-dependent                     phosphohydrolase, HD subdomain-containing protein	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Q91_0482	491071	494109	-	diguanylate cyclase/phosphodiesterase with                     PAS/PAC and GAF sensor	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS,1 GGDEF,1 EAL	0
Q91_0483	494103	494471	-	histidine kinase protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Q91_0484	494468	495817	-	ATPase, histidine kinase-, DNA gyrase B-, and                     HSP90-like domain-containing protein	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
Q91_0485	495829	496212	-	Osmosensing histidine protein kinase SLN1	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Q91_0486	496238	498631	-	hybrid histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,1 PAS,1 HisKA,1 HATPase_c,2 Response_reg	0
Q91_0626	638958	643385	+	response regulator receiver modulated                     diguanylate cyclase/phosphodiesterase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt,1 GGDEF,1 EAL	3
Q91_0714	747369	748556	+	ATP-binding region, ATPase-like:Histidine kinase                     A	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
Q91_0715	748558	749901	+	Sigma 54-dependent transcriptional activator                     containing CheY-like receiver domain	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Q91_0820	857708	858367	+	response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Q91_0821	858364	859689	+	ATPase, histidine kinase-, DNA gyrase B-, and                     HSP90-like domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Q91_0825	861589	863904	-	Response regulator receiver:ATP-binding region,                     ATPase-like:Histidine kinase, HAMP region:Histidine kinase                     A	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	0
Q91_1093	1154791	1158213	+	Signal transduction histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 2 PAS_4,2 PAS,1 HisKA,1 HATPase_c,1 Response_reg	3
Q91_1094	1158206	1159873	+	Response regulator receiver modulated                     diguanylate phosphodiesterase	RR	VieA	Response regulator, VieA family contains 1 Response_reg,1 EAL	0
Q91_1121	1190612	1191037	+	response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Q91_1128	1197562	1199277	+	response regulator/GGDEF domain-containing                     protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 GGDEF,1 EAL	0
Q91_1137	1210900	1211547	-	GacA-like protein	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Q91_1174	1247295	1248650	-	ATPase, histidine kinase-, DNA gyrase B-, and                     HSP90-like domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Q91_1175	1248668	1249348	-	response regulator consisting of a CheY-like                     receiver domain and a winged-helix DNA-binding                     domain-containing protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Q91_1322	1401083	1401799	-	response regulator consisting of a CheY-like                     receiver domain and a winged-helix DNA-binding                     domain-containing protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Q91_1323	1401807	1402796	-	ATP-binding region, ATPase-like:Histidine                     kinase, HAMP region:Histidine kinase A	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
Q91_1427	1502598	1507061	+	diguanylate cyclase	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HAMP,1 HisKA,1 HATPase_c,3 Response_reg,1 Hpt,1 GGDEF,1 EAL	1
Q91_1488	1573814	1574539	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Q91_1489	1574541	1575821	+	histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 HAMP,1 HisKA	2
Q91_1567	1656063	1656602	-	response regulator receiver domain-containing                     protein	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
Q91_1568	1656612	1657892	-	Two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	5
Q91_2081	2182340	2183395	+	signal transduction protein	PP	HisKa	Phosphotransfer protein contains 1 His_kinase	0
Q91_2082	2183392	2184132	+	alginate biosynthesis regulatory protein                     AlgR-like protein	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
Q91_2109	2209775	2211922	+	ATPase, histidine kinase-, DNA gyrase B-, and                     HSP90-like domain-containing protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	5
Q91_2110	2211951	2213318	+	Two component, sigma54 specific, transcriptional                     regulator, Fis family	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
