#Cyanothece sp. ATCC 51142 (106 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
cce_0012	9322	10008	+	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_0016	12308	13660	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
cce_0115	108513	109490	+	response regulator	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
cce_0164	152388	153749	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
cce_0165	154024	155208	+	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
cce_0220	208137	210644	+	two-component sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg,1 REC	0
cce_0257	249519	250979	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
cce_0289	281433	281801	-	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_0297	290770	292842	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	0
cce_0298	293222	293962	+	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_0446	453652	454017	-	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_0448	454271	455503	-	response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
cce_0656	662844	665570	+	two-component hybrid sensor and regulator	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,2 Response_reg,1 Hpt	2
cce_0657	665573	666496	+	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 GAF	0
cce_0678	685937	686596	-	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
cce_0712	721292	722503	+	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
cce_0713	722628	722990	+	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_0716	726288	729143	+	two-component hybrid sensor and regulator	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 HATPase_c,1 CheW,1 Response_reg	0
cce_0754	772347	772907	-	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
cce_0817	831821	832498	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_0888	892387	894423	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c	3
cce_0969	970030	971346	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
cce_0970	971380	972057	-	two-component transcription regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_1135	1130877	1131551	+	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
cce_1137	1132922	1134706	-	diguanylate cyclase	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 GGDEF,1 EAL	0
cce_1138	1134770	1138024	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 SBP_bac_3,1 PAS_4,1 GAF,1 HisKA,1 HATPase_c,1 Response_reg	3
cce_1185	1183526	1186078	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 2 Response_reg,1 PAS_3,1 GAF,1 HisKA,1 HATPase_c	0
cce_1186	1185963	1190012	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 2 GAF,1 PAS_4,2 HisKA,2 HATPase_c,1 Response_reg	0
cce_1280	1283929	1285476	+	two-component sensor histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 GAF,1 HisKA	0
cce_1412	1418954	1419337	-	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_1413	1419644	1423597	-	sensory transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 5 GAF,1 PAS_4,1 HisKA,1 HATPase_c	0
cce_1467	1478000	1479709	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	0
cce_1519	1525218	1529129	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 4 PAS_4,2 PAS_3,1 HisKA,1 HATPase_c	2
cce_1520	1529435	1529875	+	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_1521	1530119	1532293	+	hypothetical protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS_3,1 GGDEF,1 EAL	0
cce_1535	1543940	1545316	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	0
cce_1630	1643434	1644111	+	two component transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_1694	1711289	1712659	-	two component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
cce_1695	1712670	1713365	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_1725	1747381	1748094	-	two-component transcriptional regulatory                     protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_1737	1755733	1757163	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
cce_1751	1767007	1768155	-	adaptive-response sensory kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
cce_1777	1791231	1793738	+	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
cce_1808	1829803	1830582	-	OmpR family two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_1817	1834997	1840405	-	serine/threonine protein kinase and signal                     transduction histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 Pkinase,1 GAF,1 HisKA,1 HATPase_c	0
cce_1848	1872567	1873961	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
cce_1877	1903368	1905467	-	hypothetical protein	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS,1 GGDEF,1 EAL	0
cce_1878	1905542	1908880	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 2 PAS,3 PAS_3,1 PAS_4,1 HisKA_2,1 HATPase_c	4
cce_1952	1979997	1981682	+	two-component response regulator receiver                     protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
cce_1982	2012349	2012795	-	CheY-like two-component hybrid sensor and                     regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_1983	2012767	2015049	-	phytochrome A, two-component sensor protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
cce_2050	2085167	2085577	+	two-component system, regulatory protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_2232	2270018	2274517	-	two-component sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 CheB_methylest,1 MeTrc,1 PAS,1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	1
cce_2365	2418515	2419258	-	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
cce_2366	2419326	2421560	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 MASE1,1 GAF,1 HisKA,1 HATPase_c	7
cce_2375	2429311	2431857	+	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	3
cce_2376	2431874	2432863	+	two-component response regulator	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
cce_2505	2560502	2560948	+	two-component hybrid sensor and regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_2507	2561427	2562161	-	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
cce_2508	2562504	2563760	+	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
cce_2509	2563760	2564821	+	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
cce_2546	2609460	2610554	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
cce_2624	2691154	2694408	+	CheA-like two-component hybrid sensor and                     regulator	HK	CheA	Histidine kinase, CheA contains 1 H-kinase_dim,1 HATPase_c,1 CheW,2 Response_reg	0
cce_3190	3302645	3303325	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_3320	3428502	3429656	+	two-component response regulator	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE	0
cce_3327	3433278	3434570	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c	0
cce_3378	3477785	3478462	+	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_3379	3478504	3479772	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
cce_3520	3646599	3647891	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
cce_3557	3680711	3681079	-	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_3558	3681318	3686360	-	two-component hybrid sensor and regulator	HK	Classic	Histidine kinase, Classic contains 1 HAMP,3 PAS,3 PAS_3,2 PAS_4,1 HisKA,1 HATPase_c	1
cce_3559	3686423	3688252	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 2 Response_reg,1 Trans_reg_C,1 Hpt	0
cce_3713	3844646	3846904	+	phytochrome	HK	Classic	Histidine kinase, Classic contains 1 PAS_2,1 GAF,1 PHY,1 HisKA,1 HATPase_c	0
cce_3714	3846917	3847366	+	putative two-component system response                     regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_3715	3847379	3849202	+	hypothetical protein	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 PAS_3,1 GAF,1 GGDEF	0
cce_3722	3855234	3856367	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
cce_3723	3856423	3859671	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_3,1 PAS_4,1 GAF,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg	0
cce_3890	4023158	4023835	-	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 TPR_2	0
cce_3894	4028596	4029669	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	5
cce_3895	4029662	4030318	+	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
cce_3937	4069705	4072269	+	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 CHASE,1 HisKA,1 HATPase_c,1 REC	1
cce_3938	4072272	4073723	+	two-component response regulator	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 PAS_3,1 GGDEF	0
cce_3960	4090845	4091603	+	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_4002	4136512	4137243	+	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_4006	4142534	4143382	-	two-component sensor histidine kinase	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
cce_4115	4244141	4245460	-	devB-like ABC transporter membrane fusion                     protein	PP	HisKa	Phosphotransfer protein contains 1 H-kinase_dim	0
cce_4173	4297344	4298141	-	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
cce_4183	4308075	4308773	-	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
cce_4190	4314383	4317772	-	CheA-like two-component hybrid sensor and                     regulator	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg	0
cce_4195	4325518	4325880	-	CheY-like two-component hybrid sensor and                     regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_4196	4326014	4327246	-	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
cce_4204	4336680	4337474	+	two-component sensor histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HisKA	0
cce_4288	4412493	4414319	-	putative two-component response regulator	RR	PleD_VieA	Response regulator, PleD_VieA family contains 1 Response_reg,1 GGDEF,1 EAL	0
cce_4289	4414472	4417066	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg	3
cce_4317	4453023	4456022	+	CheA signal transduction histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg	0
cce_4405	4545649	4546845	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
cce_4416	4556799	4557545	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
cce_4426	4567717	4569045	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
cce_4542	4683894	4685144	+	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
cce_4543	4685265	4685624	+	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_4578	4723292	4724299	-	two-component response regulator	RR	PleD	Response regulator, PleD family contains 1 Response_reg,1 GGDEF	0
cce_4579	4724338	4727925	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	8
cce_4659	4821582	4821950	+	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
cce_4660	4821967	4824156	+	hypothetical protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
cce_4714	4877473	4878357	+	NarL family two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
cce_4751	4915573	4917870	-	two-component hybrid sensor and regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg	0
