#Clostridium botulinum E3 str. Alaska E43 (64 genes) Gene Start Stop Strand Original description class type P2CS description tm CLH_0029 31981 32877 + sensory box histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 0 CLH_0071 84214 84897 + DNA-binding response regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_0072 84903 86189 + sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 3 CLH_0142 164858 165544 + two-component response regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_0282 280003 280695 + regulatory protein VanR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_0283 280667 282523 + two-component sensor kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 5 CLH_0369 384744 385439 + alkaline phosphatase synthesis transcriptional regulatory proteinphoP RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_0370 385443 386858 + two-component sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 CLH_0436 435541 436230 + alkaline phosphatase synthesis transcriptional regulatory proteinphoP RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_0437 436235 437632 + alkaline phosphatase synthesis sensor protein PhoR HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 CLH_0709 726674 727930 + putative sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c 7 CLH_0764 794865 795971 + chemotaxis response regulator protein-glutamate methylesterase RR CheB Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest 0 CLH_0766 796760 798784 + chemotaxis protein CheA HK CheA Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW 0 CLH_0768 799426 799785 + chemotaxis protein CheY RR CheY Response regulator, CheY family contains 1 Response_reg 0 CLH_0918 951467 954169 + sensor protein KdpD HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 5 CLH_0919 954162 954869 + KDP operon transcriptional regulatory protein KdpE RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_0950 988376 990535 - two-component sensor kinase HK Classic Histidine kinase, Classic contains 1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c 0 CLH_1059 1117776 1118807 - two-component sensor kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 2 CLH_1060 1118804 1119472 - DNA-binding response regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_1064 1122223 1122903 + alkaline phosphatase synthesis transcriptional regulatory proteinphoP RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_1065 1123003 1124370 + two-component sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 0 CLH_1146 1213987 1214691 + alkaline phosphatase synthesis transcriptional regulatory proteinphoP RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_1147 1214718 1216385 + sensory histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c 4 CLH_1407 1506250 1508607 + diguanylate cyclase/phosphodiesterase domain-containing protein RR PleD_VieA Response regulator, PleD_VieA family contains 1 Response_reg,2 PAS_4,1 GGDEF,1 EAL 0 CLH_1422 1522017 1522664 + two-component response regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_1423 1522654 1524027 + sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 CLH_1474 1573498 1574403 + chemotaxis protein CheV RR CheV Response regulator, CheV family contains 1 CheW,1 Response_reg 0 CLH_1617 1748113 1748811 + two component response regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_1618 1748811 1750061 + two component sensor kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 2 CLH_1636 1770863 1771978 + sensory box histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 3 CLH_1649 1787256 1789250 + sensory transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c 0 CLH_1650 1789330 1790877 + sensory transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c 0 CLH_1651 1790912 1792672 + two-component sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c 0 CLH_1659 1802480 1803691 + two-component sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c 0 CLH_1660 1803885 1804601 + transcriptional regulatory protein RR YesN Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC 0 CLH_1797 1926163 1927569 - two-component sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 CLH_1798 1927571 1928284 - regulatory protein VanR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_1837 1967106 1969328 - sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 5 CLH_1838 1969312 1970019 - regulatory protein VanR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_1873 2004826 2005734 - metal dependent phosphohydrolase, HD region with Response Regulator Receiver modulation RR RpfG Response regulator, RpfG family contains 1 Response_reg,1 HD 0 CLH_1874 2005763 2007808 - Two component system histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 CLH_1914 2059451 2060857 - hypothetical protein HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 CLH_1915 2060866 2061567 - transcriptional regulatory protein ResD RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_1943 2096601 2097335 - AraC family transcriptional regulator RR YesN Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC 0 CLH_1944 2097351 2098592 - sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 His_kinase,1 HATPase_c 0 CLH_2007 2154222 2155583 - subtilin biosynthesis sensor protein SpaK HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 1 CLH_2008 2155571 2156233 - subtilin biosynthesis regulatory protein SpaR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_2160 2309147 2309965 - sporulation transcription factor Spo0A RR Spo0A Response regulator, Spo0A family contains 1 Response_reg,1 Spo0A_C 0 CLH_2280 2433524 2436721 - sensor histidine kinase/response regulator HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 1 CLH_2298 2465168 2465839 + transcriptional regulatory protein ResD RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_2299 2465839 2467347 + two-component sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 CLH_2390 2561282 2563297 - sensory box histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 7 CLH_2391 2563299 2564621 - sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 3 CLH_2460 2630592 2631887 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 5 CLH_2461 2631884 2632570 - regulatory protein VanR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_2698 2850961 2851836 - putative chemotaxis sensory transduction protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 CLH_2760 2927206 2928663 - sensory transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 1 CLH_2761 2928669 2929325 - response regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_2821 2993132 2994655 - two-component sensor kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 1 CLH_2822 2994645 2995355 - regulatory protein VanR RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_2847 3021578 3022594 - integral membrane sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c 1 CLH_2848 3022597 3023271 - two component transcriptional regulator, winged helix family RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 CLH_3312 3584248 3585258 - two-component sensor histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 2 CLH_3313 3585255 3585926 - DNA-binding response regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0