#Chloroflexus aggregans DSM 9485 (134 genes) Gene Start Stop Strand Original description class type P2CS description tm Cagg_0012 12949 21300 - multi-sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 12 GAF,1 PAS,1 HisKA,1 HATPase_c 0 Cagg_0013 21400 22344 - response regulator receiver modulated diguanylate cyclase RR PleD Response regulator, PleD family contains 1 Response_reg,1 GGDEF 0 Cagg_0020 30991 31680 + LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Cagg_0102 144424 146715 - multi-sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 PAS_4,1 GAF,1 HisKA,1 HATPase_c 7 Cagg_0133 182659 183006 + response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_0150 201713 202138 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_0168 220318 220986 + response regulator receiver protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Cagg_0223 279819 280766 + response regulator receiver protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Cagg_0232 289603 293232 + putative signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 3 GAF, 1 HisKA_MA, 1 HATPase_c, 5 Cagg_0233 293225 293884 + LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Cagg_0243 305086 305793 + winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_0244 305790 306965 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Cagg_0247 311245 313857 - multi-sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 PAS,1 GAF,1 HisKA,1 HATPase_c,1 Response_reg 7 Cagg_0340 422770 423423 - LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Cagg_0341 423451 425628 - GAF sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 3 GAF,1 HisKA_3,1 HATPase_c 0 Cagg_0388 480032 482413 + multi-sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 2 PAS_4,1 GAF,1 HisKA,1 HATPase_c,1 Response_reg 0 Cagg_0392 485480 486829 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 Cagg_0393 486831 487514 - winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_0424 525656 526981 + response regulator receiver modulated diguanylate cyclase RR PleD Response regulator, PleD family contains 1 Response_reg,1 GGDEF 0 Cagg_0445 552739 554211 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Cagg_0484 597186 599891 - PAS/PAC sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c 1 Cagg_0485 599956 602136 - multi-sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 2 GAF,1 PAS_4,1 HisKA,1 HATPase_c 1 Cagg_0496 612743 614407 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Cagg_0497 614404 614778 + response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_0546 664191 664871 + winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_0547 664864 666447 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 2 Cagg_0553 673432 675531 - response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase RR PleD_VieA Response regulator, PleD_VieA family contains 1 Response_reg,1 PAS_3,1 GGDEF,1 EAL 0 Cagg_0554 675584 676054 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_0555 676051 677301 - PAS/PAC sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 PAC,1 PAS_4,1 HisKA,1 HATPase_c 0 Cagg_0599 739742 740683 + response regulator receiver modulated diguanylate cyclase RR PleD Response regulator, PleD family contains 1 Response_reg,1 GGDEF 0 Cagg_0604 746608 750132 - GAF sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 2 GAF,1 HisKA,1 HATPase_c 0 Cagg_0647 796467 799301 - PAS/PAC sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 GAF,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg 0 Cagg_0648 799400 799771 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_0838 1041692 1043077 + GAF sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 GAF,1 HisKA,1 HATPase_c 1 Cagg_0839 1043131 1046754 + PAS/PAC sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 2 PAS_4,1 PAS_3,1 PAS,1 HisKA,1 HATPase_c,2 Response_reg 3 Cagg_0840 1046788 1047186 + response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_0841 1047167 1049314 + response regulator receiver modulated diguanylate cyclase RR PleD Response regulator, PleD family contains 1 Hpt,3 Response_reg,1 GGDEF 0 Cagg_0842 1049345 1050517 + response regulator receiver protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Cagg_0861 1071046 1072200 - PAS/PAC sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c 1 Cagg_0862 1072193 1073074 - response regulator receiver protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Cagg_0863 1073378 1074433 + response regulator receiver modulated metal dependent phosphohydrolase RR RpfG Response regulator, RpfG family contains 1 Response_reg,1 HD 0 Cagg_0968 1196083 1197039 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 1 Cagg_0980 1212641 1214818 - GAF sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 2 GAF,1 HisKA,1 HATPase_c 1 Cagg_0992 1224975 1226147 - response regulator receiver protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Cagg_1005 1241890 1244133 + PAS/PAC sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 PAS,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg 0 Cagg_1006 1244185 1245123 + response regulator receiver modulated diguanylate cyclase RR PleD Response regulator, PleD family contains 1 Response_reg,1 GGDEF 0 Cagg_1082 1339459 1340472 - hypothetical protein HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c 0 Cagg_1099 1356609 1357901 - PAS/PAC sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c 1 Cagg_1100 1357898 1358608 - winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_1139 1406671 1408602 + PAS/PAC sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg 0 Cagg_1175 1448282 1450747 + PAS/PAC sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 PAS, 1 PAS_4, 1 HisKA_MA, 1 HATPase_c, 1 Response_reg, 0 Cagg_1181 1455780 1456484 + winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_1182 1456539 1457603 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Cagg_1345 1665944 1666960 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c 0 Cagg_1346 1667101 1667811 + LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Cagg_1351 1676209 1676886 - winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_1360 1684442 1685731 + putative PAS/PAC sensor protein RR unclassified Response regulator, unclassified contains 1 Response_reg,1 PAS_4,1 GAF 0 Cagg_1364 1688175 1689323 + signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 PAS,1 HisKA_2,1 HATPase_c 0 Cagg_1568 1916784 1918172 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c 3 Cagg_1583 1936455 1937108 - response regulator receiver protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Cagg_1597 1951212 1954157 - GAF sensor-containing adenylate/guanylate cyclase RR CyC-C Response regulator, CyC-C family contains 1 Response_reg,3 GAF,1 PAS_4,1 Guanylate_cyc 0 Cagg_1678 2048355 2050535 + multi-sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 GAF,1 PAS_4,1 HisKA,1 HATPase_c 0 Cagg_1705 2082008 2084740 + histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 Cache_1,1 HAMP,1 HisKA,1 HATPase_c,2 Response_reg 3 Cagg_1706 2084774 2085169 + response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_1768 2161354 2163354 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c 10 Cagg_1769 2163357 2164016 + LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Cagg_1776 2177049 2179181 - GAF sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 bZIP_2,1 GAF,1 PAS,1 HisKA,1 HATPase_c 5 Cagg_1777 2179206 2179886 - winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_1830 2243959 2246784 - response regulator receiver modulated diguanylate cyclase RR RsbU Response regulator, RsbU family contains 1 Hpt,3 Response_reg,1 GGDEF,1 SpoIIE 0 Cagg_1858 2277411 2278094 + winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_1889 2317537 2320632 + GAF sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg 1 Cagg_1913 2345575 2346636 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c 0 Cagg_2009 2464281 2466539 - PAS/PAC sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c 2 Cagg_2013 2469794 2472199 - multi-sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 2 Response_reg,1 GAF,1 PAS_4,1 HisKA,1 HATPase_c 0 Cagg_2019 2478036 2481086 - GAF sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 3 GAF,1 HisKA,1 HATPase_c,1 Response_reg 0 Cagg_2047 2508851 2509426 + response regulator receiver and ANTAR domain-containing protein RR AmiR_NasR Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR 0 Cagg_2051 2512013 2512756 + winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_2054 2514492 2518097 - AraC family two component transcriptional regulator HK Hybrid Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg,2 HTH_AraC 1 Cagg_2064 2527484 2527870 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_2168 2660828 2661571 + winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_2188 2682140 2682499 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_2189 2682591 2684039 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 7 Cagg_2206 2701378 2703048 + histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg 0 Cagg_2215 2714262 2714657 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_2216 2714839 2716266 - GAF sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c 1 Cagg_2217 2716383 2717213 + winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_2291 2794032 2795822 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c 6 Cagg_2359 2868540 2869283 - LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Cagg_2395 2913294 2914769 - response regulator receiver modulated metal dependent phosphohydrolase RR RpfG Response regulator, RpfG family contains 1 Response_reg,1 HD 0 Cagg_2396 2914979 2915359 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_2403 2921743 2922828 - response regulator receiver modulated CheB methylesterase RR CheB Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest 0 Cagg_2404 2922870 2923229 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_2405 2923232 2925454 - CheA signal transduction histidine kinase HK CheA Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW,1 Response_reg 0 Cagg_2460 2986924 2988171 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 0 Cagg_2467 2995769 2996926 - response regulator receiver modulated serine phosphatase RR RsbU Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE 0 Cagg_2517 3063916 3064500 - response regulator receiver and ANTAR domain-containing protein RR AmiR_NasR Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR 0 Cagg_2532 3084682 3087066 + GAF sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg 8 Cagg_2579 3146291 3147349 + LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 2 Response_reg,1 HTH_LUXR 0 Cagg_2617 3205144 3206220 - putative signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c 6 Cagg_2625 3216357 3218984 + multi-sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 Cache_1,1 HAMP,1 HisKA,1 HATPase_c 3 Cagg_2626 3218981 3220159 + response regulator receiver sensor signal transduction histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c 0 Cagg_2675 3276930 3278930 - multi-sensor signal transduction histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 Response_reg,1 GAF,1 PAS_4,1 HisKA,1 HATPase_c 3 Cagg_2683 3285146 3286786 + multi-sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 GAF,1 PAS,1 HisKA,1 HATPase_c 0 Cagg_2688 3291096 3291464 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_2708 3322182 3323591 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 3 Cagg_2709 3323786 3324496 - winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_2746 3368120 3369910 + PAS/PAC sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c 6 Cagg_2803 3441517 3442785 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c 5 Cagg_2804 3442760 3443410 + LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Cagg_2820 3461894 3463531 - GAF sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 1 GAF,1 HisKA_3,1 HATPase_c 0 Cagg_2881 3537179 3537550 - response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_2933 3596723 3597307 + response regulator receiver and ANTAR domain-containing protein RR AmiR_NasR Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR 0 Cagg_2956 3621134 3623014 + chaperone protein DnaK PP HisKa Phosphotransfer protein contains 1 H-kinase_dim 0 Cagg_3065 3728176 3728562 + response regulator receiver protein RR CheY Response regulator, CheY family contains 1 Response_reg 0 Cagg_3071 3735943 3736857 + response regulator receiver protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Cagg_3134 3809957 3811459 + multi-sensor signal transduction histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 Response_reg,1 PAS,1 HisKA,1 HATPase_c 1 Cagg_3142 3815917 3819975 + multi-sensor hybrid histidine kinase HK Hybrid Histidine kinase, Hybrid contains 1 MASE1,1 CHASE,1 GAF,1 PAS_4,1 HisKA,1 HATPase_c,2 Response_reg 7 Cagg_3194 3876647 3878869 - putative PAS/PAC sensor protein RR RpfG Response regulator, RpfG family contains 2 Response_reg,1 PAS,1 HD 0 Cagg_3195 3878835 3879899 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 1 Cagg_3209 3892969 3894219 + response regulator receiver protein RR unclassified Response regulator, unclassified contains 1 Response_reg 0 Cagg_3245 3931288 3933870 + signal transduction histidine kinase, nitrogen specific, NtrB HK Hybrid Histidine kinase, Hybrid contains 2 GAF,1 PAS,1 HisKA,1 HATPase_c,1 Response_reg 0 Cagg_3250 3938473 3941115 - multi-sensor signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 2 GAF,1 PAS,1 HisKA,1 HATPase_c 0 Cagg_3265 3956878 3957615 + winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_3266 3957596 3959026 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Cagg_3302 3999622 4000317 + winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_3303 4000407 4001477 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Cagg_3359 4072295 4072954 - LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Cagg_3501 4266956 4268365 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c 2 Cagg_3502 4268352 4269050 - winged helix family two component transcriptional regulator RR OmpR Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C 0 Cagg_3631 4411951 4413951 + signal transduction histidine kinase HK Classic Histidine kinase, Classic contains 2 GAF,1 HisKA_2,1 HATPase_c 0 Cagg_3668 4461921 4462562 - LuxR family two component transcriptional regulator RR NarL Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR 0 Cagg_3669 4462537 4464006 - histidine kinase HK Classic Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c 2 Cagg_3744 4563864 4565120 + histidine kinase HK Classic Histidine kinase, Classic contains 1 HisKA,1 HATPase_c 1 Cagg_3753 4572562 4575303 + multi-sensor hybrid histidine kinase HK Unorthodox Histidine kinase, Unorthodox contains 1 PAS,1 PAS_3,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt 0