#Caldilinea aerophila DSM 14535 = NBRC 104270 (79 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
CLDAP_00570	66874	71694	-	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 4 PAS_4,1 PAS_3,1 GAF,1 HisKA,1 HATPase_c,2 Response_reg	6
CLDAP_00850	121527	123062	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	2
CLDAP_00860	123277	123996	-	putative OmpR family two-component response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_01010	141486	146057	-	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 CHASE,3 PAS,1 HisKA,1 HATPase_c,2 Response_reg	4
CLDAP_02710	368063	369124	+	putative two-component response regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	1
CLDAP_03350	441564	442247	-	putative two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CLDAP_03360	442244	443662	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	2
CLDAP_03530	466279	469038	-	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,1 PAS_3,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	0
CLDAP_03540	469763	473065	+	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 3 GAF,1 HisKA,1 HATPase_c,1 Response_reg	1
CLDAP_03550	473069	474706	-	putative two-component hybrid sensor and                     regulator	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 PAS_4,1 HisKA,1 HATPase_c	0
CLDAP_04400	543840	544517	+	putative OmpR family two-component response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_04410	544576	546090	+	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
CLDAP_04650	579779	581008	+	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
CLDAP_05270	651674	652834	+	putative adenylate/guanylate cyclase	RR	CyC-C	Response regulator, CyC-C family contains 1 Response_reg,1 CYCc	0
CLDAP_07790	972033	973967	+	putative two-component hybrid sensor and                     regulator	HK	Classic	Histidine kinase, Classic contains 2 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c	0
CLDAP_08440	1052117	1052746	-	putative NarL family two-component response                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CLDAP_08450	1052825	1054267	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	0
CLDAP_09100	1130530	1132242	+	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg	2
CLDAP_09720	1212381	1212917	-	putative two-component response regulator	RR	AmiR_NasR	Response regulator, AmiR_NasR family contains 1 Response_reg,1 ANTAR	0
CLDAP_09730	1213267	1214799	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_2,1 HATPase_c	0
CLDAP_10030	1249455	1250621	-	putative two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
CLDAP_10050	1252807	1253220	-	putative two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CLDAP_10060	1253237	1256002	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 MCPsignal,1 HisKA,1 HATPase_c	13
CLDAP_10140	1265478	1266149	+	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	0
CLDAP_10150	1266146	1266793	+	putative two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CLDAP_12010	1511723	1512529	-	putative OmpR family two-component response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_12570	1582918	1583679	+	putative two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_12920	1621994	1622380	-	putative two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CLDAP_12930	1622609	1625185	-	putative two-component hybrid sensor and                     regulator	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA,1 HATPase_c,2 HTH_AraC	0
CLDAP_13180	1652351	1654060	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 PAS_4,1 HisKA,1 HATPase_c	1
CLDAP_13880	1742689	1744197	-	putative two-component response regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg, 1 HisKA_MA, 1 HATPase_c, 	0
CLDAP_13950	1750588	1752411	-	putative two-component hybrid sensor and                     regulator	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 PAS,1 HisKA,1 HATPase_c	0
CLDAP_14000	1756817	1757959	+	putative two-component response regulator	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE	0
CLDAP_14080	1769205	1769894	-	putative OmpR family two-component response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_14410	1810162	1811646	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
CLDAP_14420	1811656	1812384	-	putative OmpR family two-component response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_20720	2590228	2592561	+	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
CLDAP_21010	2627571	2629166	+	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 GAF,1 HisKA_3,1 HATPase_c	0
CLDAP_21020	2629223	2629876	+	putative NarL family two-component response                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CLDAP_21040	2631887	2632261	+	putative two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CLDAP_22250	2777042	2777446	+	putative two-component response regulator	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
CLDAP_22760	2845466	2846197	+	putative OmpR family two-component response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_23150	2889924	2892131	+	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,2 Response_reg	6
CLDAP_23810	2973385	2974089	+	putative OmpR family two-component response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_23820	2974118	2975539	+	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
CLDAP_24340	3038936	3040072	+	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA,1 HATPase_c	0
CLDAP_24460	3052420	3056019	+	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Peripla_BP_1,1 HisKA,1 HATPase_c,2 Response_reg,2 HTH_AraC	1
CLDAP_25240	3148348	3149139	-	hypothetical protein	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
CLDAP_25540	3184599	3185237	-	putative NarL family two-component response                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CLDAP_25550	3185234	3187477	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 GAF,1 HisKA_3,1 HATPase_c	1
CLDAP_26630	3320592	3322505	+	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	1
CLDAP_26640	3322668	3323108	+	putative two-component hybrid sensor and                     regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CLDAP_26650	3323113	3326487	+	putative two-component hybrid sensor and                     regulator	HK	Classic	Histidine kinase, Classic contains 3 GAF, 1 HisKA_MA, 1 HATPase_c, 	0
CLDAP_26660	3326579	3328174	+	putative two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
CLDAP_27630	3444191	3445711	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
CLDAP_27640	3445708	3446454	-	putative OmpR family two-component response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_28170	3511428	3512687	+	putative two-component hybrid sensor and                     regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
CLDAP_28180	3512593	3514755	-	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,2 Response_reg	5
CLDAP_28540	3551702	3552367	-	putative NarL family two-component response                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CLDAP_28550	3552676	3554055	+	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_3,1 HATPase_c	1
CLDAP_28890	3584456	3584803	+	putative two-component histidine kinase	PP	HisKa	Phosphotransfer protein contains 1 HisKA_3	0
CLDAP_30040	3727426	3728922	+	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	3
CLDAP_30050	3728919	3729587	+	putative two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
CLDAP_30520	3795263	3795910	-	putative two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CLDAP_30530	3795907	3797691	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 MASE1,1 HisKA_3,1 HATPase_c	5
CLDAP_30550	3800150	3801727	+	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	7
CLDAP_30560	3801739	3802425	+	putative NarL family two-component response                     regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
CLDAP_30570	3802627	3803004	+	putative two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CLDAP_30930	3844682	3846877	-	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 GAF,1 HisKA,1 HATPase_c,1 REC,1 Response_reg	1
CLDAP_31170	3877750	3880032	+	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 PAS_4,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg	0
CLDAP_31320	3900258	3900584	+	putative two-component hybrid sensor and                     regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CLDAP_31390	3908106	3909776	-	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 GAF,1 HisKA,1 HATPase_c	0
CLDAP_34310	4277761	4280154	+	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg	3
CLDAP_35060	4373306	4376704	-	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 PAS_4,1 GAF,1 HisKA,1 HATPase_c,1 Response_reg	2
CLDAP_35070	4376701	4379637	-	putative two-component hybrid sensor and                     regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 GAF,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	5
CLDAP_35750	4466682	4467911	-	putative two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
CLDAP_37230	4654010	4655248	-	putative two-component histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
CLDAP_37570	4701364	4701912	-	putative NarL family two-component response                     regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
CLDAP_41090	5134711	5135436	+	putative OmpR family two-component response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
