#Bacillus subtilis XF-1 (68 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
C663_0188	214835	215506	+	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_0189	215503	216489	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
C663_0233	258354	259739	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	5
C663_0234	259750	260694	+	two-component response regulator	RR	YcbB	Response regulator, YcbB family contains 1 Response_reg,1 YcbB	0
C663_0244	271406	272098	+	hypothetical protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_0245	272100	273035	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
C663_0265	288647	289348	-	two-component response regulator	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
C663_0368	419744	420541	+	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_0369	420531	421949	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
C663_0440	491120	492727	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	3
C663_0441	492717	493397	+	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 HTH_11	0
C663_0514	564326	565708	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
C663_0523	571954	573117	+	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	7
C663_0524	573110	573751	+	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
C663_0722	776005	777738	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 His_kinase,1 HATPase_c	3
C663_0723	777738	778844	+	two-component response regulator	RR	YesN	Response regulator, YesN family contains 1 Response_reg,2 HTH_AraC	0
C663_0781	842246	843874	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	2
C663_0782	843903	844526	+	two-component response regulator	RR	CitT	Response regulator, CitT family contains 1 Response_reg,1 CitT	0
C663_0847	909389	910555	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
C663_0848	910552	911214	+	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
C663_0957	1012887	1013534	+	wo-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
C663_1364	1395848	1396510	+	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_1365	1396514	1397878	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
C663_1393	1423090	1425306	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 4 PAS_4,1 HisKA,1 HATPase_c	0
C663_1407	1435365	1436813	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 Cache_1,1 HisKA,1 HATPase_c	2
C663_1442	1471908	1473752	+	sporulation-specific ATP-dependent protein                     histidine kinase	HK	Classic	Histidine kinase, Classic contains 3 PAS,1 HisKA,1 HATPase_c	0
C663_1445	1475537	1476421	+	coupling protein and response regulator for CheA                     activity in response to attractants (chemotaxis)	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
C663_1492	1516880	1518166	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	3
C663_1679	1703023	1703385	+	regulator of chemotaxis and motility	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
C663_1688	1710934	1711998	+	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
C663_1689	1711995	1714022	+	chemotactic two-component sensor histidine                     kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
C663_1847	1929730	1930092	+	putative response regulator (CheY-like protein)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
C663_1969	2079192	2080304	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
C663_1970	2080314	2080922	+	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
C663_2188	2269628	2271397	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	3
C663_2189	2271394	2272149	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_2304	2370897	2371700	-	response regulator	RR	Spo0A	Response regulator, Spo0A family contains 1 Response_reg,1 Spo0A_C	0
C663_2464	2506951	2508246	-	two-component sensor histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 HAMP,1 HisKA	3
C663_2465	2508236	2508931	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_2737	2767575	2768291	-	two-component response regulator	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
C663_2738	2768278	2770059	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 His_kinase,1 HATPase_c	6
C663_2755	2787856	2789550	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
C663_2756	2789588	2790310	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_2886	2923991	2924995	-	two-component sensor histidine kinase                     controlling resistance to antibiotics affecting the                     envelope	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	2
C663_2887	2924988	2925671	-	hypothetical protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_3005	3041924	3043210	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	5
C663_3013	3049036	3050637	+	sensory histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	2
C663_3014	3050666	3051337	+	two-component response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
C663_3030	3065411	3066970	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
C663_3163	3198154	3198831	+	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_3164	3198828	3200183	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
C663_3172	3206863	3207498	-	transcriptional regulatory protein	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
C663_3173	3207476	3208558	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA_3,1 HATPase_c	2
C663_3186	3219054	3220796	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
C663_3187	3220793	3221539	-	hypothetical protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_3286	3317442	3318044	-	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
C663_3287	3318061	3319176	-	hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
C663_3358	3391383	3392384	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
C663_3359	3392447	3393160	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_3435	3465387	3465920	-	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
C663_3529	3575885	3576961	-	hypothetical protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_3530	3577144	3580230	+	two-component sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,2 HATPase_c,1 Response_reg,1 His_kinase	9
C663_3613	3648431	3648805	-	two-component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
C663_3807	3836216	3836872	+	two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
C663_3884	3917879	3918856	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
C663_3885	3918853	3919530	-	two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
C663_3958	3996206	3997996	-	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAC,1 HisKA,1 HATPase_c	0
C663_3959	3998049	3998789	-	hypothetical protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
