#Bacillus cereus F837/76 (111 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
bcf_01590	275382	276083	+	Phosphate regulon transcriptional regulatory                     protein PhoB (SphR)	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_01595	276139	277572	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_01900	347493	349511	+	sporulation kinase	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 PAS_4,1 HisKA,1 HATPase_c	0
bcf_02880	543897	545501	+	Two-component sensor histidine kinase, malate	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	3
bcf_02885	545501	546193	+	Two-component response regulator, malate	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 HTH_11	0
bcf_02920	551332	552003	+	Two-component response regulator, malate	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_02925	552264	553250	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
bcf_02945	557338	558942	+	Two-component sensor histidine kinase, malate	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	3
bcf_02950	558939	559646	+	Two-component response regulator, malate	RR	unclassified	Response regulator, unclassified contains 1 Response_reg	0
bcf_02985	566597	568060	-	Osmosensitive K+ channel histidine kinase KdpD	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_02990	568126	568797	-	response regulator DrrA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_03245	627683	628915	+	Hypothetical protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	2
bcf_03250	628917	629558	+	DNA-binding response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
bcf_03340	647849	649234	-	Osmosensitive K+ channel histidine kinase KdpD	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_03345	649246	649923	-	response regulator DrrA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_04655	901305	902894	+	Two-component sensor histidine kinase, malate	HK	Classic	Histidine kinase, Classic contains 1 PAS, 1 HisKA_MA, 1 HATPase_c, 	3
bcf_04660	902914	903591	+	response regulator	RR	unclassified	Response regulator, unclassified contains 1 Response_reg,1 HTH_11	0
bcf_05005	966321	967463	+	Serine phosphatase RsbU, regulator of sigma                     subunit	RR	RsbU	Response regulator, RsbU family contains 1 Response_reg,1 SpoIIE	0
bcf_05015	968376	971066	-	sensor histidine kinase/response regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 CHASE3,1 HAMP,1 GAF,1 Histone_HNS,1 HisKA,1 HATPase_c,1 Response_reg	1
bcf_05060	975369	976586	+	Nitrate/nitrite sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
bcf_05065	976576	977220	+	DNA-binding response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
bcf_05615	1072081	1073823	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
bcf_05620	1073833	1074537	-	response regulator DrrA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_06585	1246336	1247007	+	Phosphate regulon transcriptional regulatory                     protein PhoB (SphR)	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_06590	1247011	1248411	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_06760	1279098	1280594	-	sensor histidine kinase KinD	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
bcf_06785	1283989	1285197	-	Sporulation kinase B like protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	5
bcf_07280	1365857	1366912	+	Sensor histidine kinase LiaS	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	2
bcf_07285	1366909	1367328	+	Response regulator LiaR like protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
bcf_07380	1384679	1385941	-	Sporulation kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA,1 HATPase_c	0
bcf_07400	1388192	1390003	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
bcf_07470	1403739	1404455	+	DNA-binding response regulator ResD family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_07475	1404455	1406230	+	Sensor histidine kinase ResE	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	3
bcf_08220	1544334	1544702	+	Chemotaxis regulator - transmits chemoreceptor                     signals to flagelllar motor components CheY	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
bcf_08225	1544832	1546835	+	Signal transduction histidine kinase CheA	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
bcf_08355	1568568	1569476	+	Chemotaxis protein CheV	RR	CheV	Response regulator, CheV family contains 1 CheW,1 Response_reg	0
bcf_08795	1644436	1645137	+	fructose response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
bcf_08800	1645142	1646248	+	Sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	5
bcf_08845	1656694	1657983	+	Two-component sensor histidine kinase,                     controling glutamine utilization	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	5
bcf_08850	1657986	1658918	+	Two-component response regulator, controling                     glutamine utilization	RR	YcbB	Response regulator, YcbB family contains 1 Response_reg,1 YcbB	0
bcf_09205	1731326	1732024	+	response regulator DrrA	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_09210	1732014	1733081	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
bcf_09305	1751695	1752408	+	Response regulator of CheY-like family	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_09310	1752409	1753845	+	putative RumK like protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_09635	1819153	1819917	+	Two-component system response regulator QseB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_09640	1819914	1820987	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_09720	1836746	1837435	+	Phosphate regulon transcriptional regulatory                     protein PhoB (SphR)	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_09725	1837432	1838793	+	Sensor protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
bcf_11095	2093763	2094446	+	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_11100	2094450	2095808	+	Two-component sensor kinase SA14-24 like                     protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
bcf_11350	2141600	2142718	+	Nitrate/nitrite sensor protein	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_3,1 HATPase_c	0
bcf_11355	2142732	2143361	+	DNA-binding response regulator, LuxR family	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
bcf_11475	2170376	2171509	+	Sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
bcf_12820	2426954	2428111	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_12825	2428101	2428796	-	Phosphate regulon transcriptional regulatory                     protein PhoB (SphR)	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_13025	2465899	2466606	+	Two-component response regulator YvcP like                     protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_13030	2466603	2467586	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
bcf_13995	2627978	2629354	-	sensor histidine kinase SrrB, putative	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
bcf_14000	2629347	2629994	-	Two-component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_14680	2757024	2758244	-	putative histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	6
bcf_14685	2758340	2759074	-	Response regulator of the competence regulon                     ComE	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
bcf_15275	2863861	2866266	-	sporulation kinase	HK	Classic	Histidine kinase, Classic contains 3 PAS_4,1 HisKA,1 HATPase_c	5
bcf_15365	2889470	2890414	-	Two-component response regulator, controling                     glutamine utilization	RR	YcbB	Response regulator, YcbB family contains 1 Response_reg,1 YcbB	0
bcf_15370	2890419	2891735	-	Two-component sensor histidine kinase,                     controling glutamine utilization	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	6
bcf_15485	2912366	2913826	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
bcf_15490	2913823	2914512	-	Phosphate regulon transcriptional regulatory                     protein PhoB (SphR)	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_15580	2936012	2937601	+	SalK-like protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	9
bcf_15585	2937570	2938184	+	Transcriptional regulator DegU, LuxR family	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
bcf_15715	2966909	2967583	+	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_15720	2967643	2968953	+	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_15895	3005579	3006955	-	Sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
bcf_15900	3006957	3007634	-	Two-component response regulator colocalized                     with HrtAB transporter	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_15990	3024514	3025668	-	Sensor histidine kinase VanS	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
bcf_15995	3025658	3026353	-	Vancomycin response regulator VanR	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_16475	3125227	3127020	+	response regulator	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA_3,1 HATPase_c,1 Response_reg,1 HTH_LUXR	5
bcf_17855	3381103	3381780	-	Chemotaxis regulator - transmits chemoreceptor                     signals to flagelllar motor components CheY	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_18070	3413221	3414753	+	sporulation kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c	0
bcf_19920	3785675	3786949	-	Sporulation kinase B	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	7
bcf_20735	3930481	3931311	-	Stage 0 sporulation two-component response                     regulator (Spo0A)	RR	Spo0A	Response regulator, Spo0A family contains 1 Response_reg,1 Spo0A_C	0
bcf_22080	4169618	4170700	-	Two-component sensor kinase YvcQ like protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	3
bcf_22085	4170690	4171397	-	Two-component response regulator YvcP like                     protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_22525	4266545	4268011	+	Two component sensor histidine kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 His_kinase,1 HATPase_c,1 Response_reg,2 HTH_AraC	1
bcf_22705	4301224	4302159	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	0
bcf_22710	4302161	4302853	-	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_22980	4357311	4359074	-	Phosphate regulon sensor protein PhoR (SphS)	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	2
bcf_22985	4359067	4359786	-	Alkaline phosphatase synthesis transcriptional                     regulatory protein PhoP	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_23435	4436861	4437550	-	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_23440	4437552	4439006	-	Two-component sensor kinase yycG like protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_23960	4530901	4532121	-	sensor histidine kinase, putative	HK	Classic	Histidine kinase, Classic contains 1 HisKA_MA, 1 HATPase_c	5
bcf_23965	4532118	4533374	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	5
bcf_24160	4561926	4563779	-	sensory box histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	1
bcf_24165	4563776	4564465	-	DNA-binding response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_24245	4577629	4578324	+	Two-component response regulator YvcP like                     protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_24250	4578327	4579349	+	Two-component sensor kinase YvcQ like protein	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
bcf_24315	4594025	4595098	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_24320	4595124	4595822	-	Phosphate regulon transcriptional regulatory                     protein PhoB (SphR)	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_25265	4762528	4763193	+	Two-component response regulator vanRB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_25270	4763171	4764613	+	Sensor protein VanSB	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
bcf_25560	4823209	4823886	-	hypothetical protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_26360	4978605	4980035	-	Two component system histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
bcf_26365	4980047	4980718	-	Two-component system DNA-binding response                     regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
bcf_26790	5058812	5059135	-	Sporulation initiation phosphotransferase                     (Spo0F)	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
bcf_26870	5076999	5077601	-	Two-component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
bcf_26875	5077598	5078515	-	sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA_3,1 HATPase_c	3
bcf_27170	5139943	5140590	-	two component transcriptional regulator, LuxR                     family	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
bcf_27175	5140611	5142182	-	sensor histidine kinase, putative	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 HisKA_3,1 HATPase_c	1
bcf_27205	5146815	5147531	-	Autolysis response regulator LytR	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
bcf_27320	5174158	5174898	-	Autolysis response regulator LytR	RR	LytTR	Response regulator, LytTR family contains 1 Response_reg,1 LytTR	0
bcf_27325	5174876	5176645	-	Autolysis histidine kinase LytS	HK	Classic	Histidine kinase, Classic contains 1 GAF,1 His_kinase,1 HATPase_c	6
bcf_27435	5199330	5201171	-	Two-component sensor kinase SA14-24 like                     protein	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
bcf_27440	5201175	5201882	-	Two-component response regulator SA14-24 like                     protein	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
