#Agrobacterium vitis S4 (66 genes)
Gene	Start	Stop	Strand	Original description	class	type	P2CS description	tm
Avi_0044	33554	34276	+	two component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_0045	34514	36286	+	two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	4
Avi_0050	39579	42314	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	1
Avi_0063	55510	56085	-	two component response regulator	RR	PrrA	Response regulator, PrrA family contains 1 Response_reg,1 HTH_8	0
Avi_0064	56244	57548	-	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Avi_0202	181269	181937	+	two component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_0203	181931	183286	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	3
Avi_0384	328236	329270	-	two component sensor kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 Response_reg,1 HisKA_2,1 HATPase_c	0
Avi_0385	329286	329723	-	two component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_0386	329726	331213	-	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 CHASE3, 1 HisKA_MA, 1 HATPase_c, 	3
Avi_0417	354824	356458	+	two component sensor kinase/response regulator                     hybrid	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	0
Avi_0453	387323	388747	-	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP, 1 HisKA_MA, 1 HATPase_c, 	3
Avi_0485	410350	411033	-	phosphate regulon transcriptional regulatory                     protein PhoB	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_0496	417227	418486	-	phosphate regulon sensor kinase PhoR	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
Avi_0520	442287	442688	+	two component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_0522	443179	445434	+	two component sensor kinase/response regulator                     hybrid	HK	Unorthodox	Histidine kinase, Unorthodox contains 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt	2
Avi_0523	445552	446631	+	Response regulator protein	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
Avi_0539	459064	459447	+	two component response regulator	RR	unclassified	Response regulator, unclassified contains 1 REC	0
Avi_0584	501085	501732	-	two component response regulator	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Avi_0620	538015	541524	-	two component sensor kinase/response regulator                     hybrid	HK	Hybrid	Histidine kinase, Hybrid contains 1 HisKA,1 HATPase_c,1 Response_reg	13
Avi_0763	652440	653111	+	transcriptional regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_0827	708276	712508	-	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
Avi_0849	724941	726278	-	Two-component sensor histidine kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Avi_0850	726307	726984	-	two component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_0893	754289	755953	-	two component sensor kinase	RR	unclassified	Response regulator, unclassified contains 1 PAS,1 Response_reg	0
Avi_0950	797651	798655	+	Signal transduction histidine kinase	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_4,1 HWE_HK	1
Avi_1193	1007844	1009019	+	sensory transduction regulatory protein	HK	Classic	Histidine kinase, Classic contains 1 PAS_4,1 HisKA_2,1 HATPase_c	0
Avi_1195	1009190	1009582	+	Two component sensor kinase/response regulator                     hybrid protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_1305	1093529	1095328	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	2
Avi_1358	1135659	1136333	+	two component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_1359	1136334	1137749	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Avi_1370	1144917	1145675	+	two component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_1371	1145685	1147091	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	3
Avi_1373	1150143	1152515	-	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS_3,1 HisKA,1 HATPase_c	3
Avi_1636	1367090	1368118	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA_2,1 HATPase_c	0
Avi_1749	1460643	1461014	+	two component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_1750	1461199	1462572	+	response regulator PleD	RR	PleD	Response regulator, PleD family contains 2 Response_reg,1 GGDEF	0
Avi_2051	1684429	1685964	-	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HisKA,1 HATPase_c	6
Avi_2134	1748035	1749180	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 PAS,1 HisKA,1 HATPase_c	1
Avi_2135	1749177	1750628	+	nitrogen regulation protein NR(I)	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Avi_2136	1750835	1753114	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 PAS,1 HisKA,1 HATPase_c	4
Avi_2137	1753104	1754468	+	two component response regulator	RR	NtrC	Response regulator, NtrC family contains 1 Response_reg,1 AAA_5,1 HTH_8	0
Avi_2241	1845289	1845657	+	hypothetical protein	PP	HPt	Phosphotransfer protein contains 1 Hpt	0
Avi_2463	2025032	2027650	-	two component sensor kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c,1 Response_reg	2
Avi_2726	2257092	2257925	-	two component response regulator	RR	FrzZ	Response regulator, FrzZ family contains 2 Response_reg	0
Avi_3164	2621506	2622204	+	two component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_3166	2622390	2623712	+	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 HAMP,1 HisKA,1 HATPase_c	2
Avi_3336	2759432	2760853	-	two component sensor kinase	HK	Classic	Histidine kinase, Classic contains 1 2CSK_N,1 HAMP,1 HisKA,1 HATPase_c	2
Avi_3337	2760869	2761534	-	two component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_3360	2779962	2783810	-	two component sensor kinase/response regulator                     hybrid	HK	Hybrid	Histidine kinase, Hybrid contains 1 PAS_4,1 PAS,1 HisKA,1 HATPase_c,2 Response_reg	0
Avi_3496	2893645	2896203	+	bacteriophytochrome protein	HK	Classic	Probable incomplete histidine kinase contains 1 PAS_2,1 GAF,1 PHY,1 HWE_HK,1 Response_reg	1
Avi_3498	2897425	2900802	+	two component sensor kinase	HK	Hybrid	Histidine kinase, Hybrid contains 1 PTS_EIIC,1 HisKA,1 HATPase_c,1 Response_reg	14
Avi_3499	2901073	2902011	+	transcriptional regulator LuxR family	RR	NarL	Response regulator, NarL family contains 1 Response_reg,1 HTH_LUXR	0
Avi_3527	2923892	2924593	+	two component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_3528	2924838	2925197	-	two component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_3746	3109401	3109766	+	chemotaxis response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_4023	3388446	3388805	-	two component response regulator	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_4072	3425555	3425944	-	chemotaxis receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_4073	3425944	3426981	-	chemotaxis-specific methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Avi_4077	3428355	3430343	-	Chemotaxis protein histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 H-kinase_dim,1 HATPase_c,1 CheW	0
Avi_4079	3430623	3430988	-	chemotaxis receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_4227	3555724	3556407	+	two component response regulator	RR	OmpR	Response regulator, OmpR family contains 1 Response_reg,1 Trans_reg_C	0
Avi_4309	3622552	3623646	-	protein-glutamate methylesterase	RR	CheB	Response regulator, CheB family contains 1 Response_reg,1 CheB_methylest	0
Avi_4316	3631243	3633300	-	Chemotaxis protein histidine kinase	HK	CheA	Histidine kinase, CheA contains 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW	0
Avi_4317	3633297	3633665	-	chemotaxis receiver protein	RR	CheY	Response regulator, CheY family contains 1 Response_reg	0
Avi_4319	3633993	3635141	-	Metal dependent phosphohydrolase with a response                     regulator receiver protein	RR	RpfG	Response regulator, RpfG family contains 1 Response_reg,1 HD	0
